Ndro020815.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990161.1:9923773-9927316[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-10 6.8e-08 32.3 0.0 3 38 16 51 14 56 0.93 2 2 4.6 2.7e+03 -1.6 0.1 1 14 278 291 278 297 0.86
Sequence Information
- Coding Sequence
- ATGTCTACATCCTACAAATACAGCAAAAGAAAGAAGTGGGAGAAGGAGGATATGCCCGCTGCGATTATCGCTGTTCGAGAAAAGAGAATGGGATACTTGAAGGCAGCTAAACACTTTAACGTTCCCAGGTCTACCCTCTTTAGATTTGTTAATGATAATGACTCCTCGACTGAATCTGTAATGAATAAAGTTATTGGTCGAAGGCCAGTTTTGGGTACAGATATTGAAAACATGCTGGTTGAGTACATATTAACAATGGAGAATAAATTTTATGGACTGACCAGAATGGATTTGCGTCGGTTGGCATATCAATTAGCTATAAAAAATAATATTCAAAACGCTTTTAAGGACGGATTTGCTGGAAGATACTGGCTGAAGGGATTTTTAAAACGACATAAGGAAATTTTGTCCATAAGACAGCCAACTGCAACTTCTCAAGCAAGGGCCAATGGATTCACTAAAGAAAGAGTGGACGAGTTCTACGATAATCTTGACAAAATCCAGGCTGATAAGCCTTTCCCTGCTGCGCGCATATTCAACGTTGATGAGAGTGAATTGATAGATCTAGCGAAACAGAATTATGTGACAATTCTATCTTTGCCACCTCATTGCACGCACAAAATTCAACCCCTTGATCGTACTTTCATGGGTCCTTTAAAATGTTACTACAGTGAAGAAGTCAGGGTGTTTCTCCGGGAACATAACAGGCCTGTAACACCATATGATGTTGTTGAGCTATTTGGGAGAGCCTACATCAAGTGCCAAACCGCCGAAATTGCTGCAAATGGTTTTAAAATTGGTGGAATATATCCATTTAATAGAAATATATTTACTGAAGCTGATTTCATAGCCGCTGCTGCTGATGTTTCAGAGGATGAAAACCCTCAAACGAGTCCAAATCCGCTCGACTCACCCGTGGCCACTTTTCGGCGATTGGAGAATTTCGATGAAGCTCAACCAGGGCCATCAGGAATCCAATCAATAGTTACTCCCTCTCAAATTTCTCCCGTGCCAATAGTAAAAAAGAGAACGAGCAATAGAGGCCGTAAGCCAGCAAAATCCGCAATAATTTCAAGTTCCCCTTATAAGAAAGACCTTGAGAATGCACAATTTAAAAAGTCGGGAAAGGCGAAGAAAGCACAGAAAAAAAATGTTAAAGGAAAAAGCAAGAAGAATGTAACAAAAAACACAAATGAGAGAAGTATTACAGAAAGCGGCGAAGTGGGAGCACGTGAATGGGCGTGCGGATCGATACAGCGGACTGCGCAGGCTCGCTGTGCCGGTACTCAGCTGGCTCCGCCACCGCCGCCGACCCCGCTCAACCCGACTCAGTGTCCACTGTGA
- Protein Sequence
- MSTSYKYSKRKKWEKEDMPAAIIAVREKRMGYLKAAKHFNVPRSTLFRFVNDNDSSTESVMNKVIGRRPVLGTDIENMLVEYILTMENKFYGLTRMDLRRLAYQLAIKNNIQNAFKDGFAGRYWLKGFLKRHKEILSIRQPTATSQARANGFTKERVDEFYDNLDKIQADKPFPAARIFNVDESELIDLAKQNYVTILSLPPHCTHKIQPLDRTFMGPLKCYYSEEVRVFLREHNRPVTPYDVVELFGRAYIKCQTAEIAANGFKIGGIYPFNRNIFTEADFIAAAADVSEDENPQTSPNPLDSPVATFRRLENFDEAQPGPSGIQSIVTPSQISPVPIVKKRTSNRGRKPAKSAIISSSPYKKDLENAQFKKSGKAKKAQKKNVKGKSKKNVTKNTNERSITESGEVGAREWACGSIQRTAQARCAGTQLAPPPPPTPLNPTQCPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01073538; iTF_01073544; iTF_01073543; iTF_01079824; iTF_01079825; iTF_01079826; iTF_01079827; iTF_01073536; iTF_01073537;
- 90% Identity
- iTF_01073538;
- 80% Identity
- -