Basic Information

Gene Symbol
-
Assembly
GCA_905220585.1
Location
HG992251.1:9607974-9609785[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.2e-12 2.2e-09 37.4 0.0 3 38 16 51 14 56 0.93
2 3 6 6e+03 -2.4 0.0 9 22 135 149 135 149 0.80
3 3 5.4 5.4e+03 -2.3 0.0 22 31 175 184 175 187 0.79

Sequence Information

Coding Sequence
ATGTCTGCATCTCATAAATACAGCAAGAGAAAGAAGTGGGAGAAGGAGGATATGTCCGCTGCGATTATCGCTGTACAAGAAAAGAAAATGGGATACTTGAAGGCAGCTAAACACTTTAACGTTCCCAGGTCTACCCTCTTTCGATTTGTTAATGACAATGACTCTTCGACTGAATCTGTACTTAATAAAGTTATTGGTCGAAGGCCAGTTTTGGGTACAGATATTGAAAAGATGCTGGTTGAATATATATTATCAATGGAGAATAAATTTTATGGGCTGACCAGAATGGATTTGCGTCGGTTGGCATATCAATTAGCTACAAAAAATAATATACAAAACGCTTTTAGGGATGGATTTGCTGGAAGATACTGGCTGAAGGGATTTTTAAAACGACACAAGGAAATTTTTTCCATAAGACAGCCAACTGGAACTTCTCAAGCAAGGGCCAATGGATTCACTAAAGAAAGAGTGGACGAGTTCTACGACAACCTAGACAAAATCCAGGCTGATAAGCCTTTCCCTGCTGCGCGCATATTCAACGTTGATGAGAGTGGTCTCTCTATAGTTCAGAATCTAGCGAAACAGAATTATGTGACAATTCTATCTTTGCCACCACATTGCACGCACAAAATTCAACCACTTGATCGTACTTTCATGGGTCCTTTAAAATGTTACTACAGTGAAGAAGTCAGGGTGTTTCTCCGGGAACATAACAGACCTGTAACACCATATGATGTTGTTGAGCTATTTGGGCGAGCCTACATCAAGTGCCAAACAGCCGAAATTGCTGCAAATGGTTTTAAAATTGGTGGAATATATCCTTTTAATAGAAATATATTTACAGAAGCTGATTACATAGCCACTGCTGCTGATGTTTCAGAGGATCAAAACACTCAAACGAGTCCAAACCCGCTCGCCTCACCCGTGGCCGCTTTTCGGCGATTGGAGAATTTTGATGAAGCTCAACCAGGACCATCAGGAATCCCACCACTAGTTACTCCCTCTCAAATATCTCCCGTGCCAATAGTAAAAAAGAGAACGAGCAATAGAGGCCGTAAGCCAGCAAAATCCGCAATAATTTCAAGTTCCCCTTATAAGAAAGACCTTGAGAATGCACAATTTAAAAAGTCGGAAAAGGAAAAGACATCACAGAAAAAAAATGTTAAGGGAAAAGGCAAGAAGAATGTAACAAAAAAATCAAATGAGAGAAATATTACAGAAAGTGAGTCATCAGATTTAAATCCTGCTGTCTATGGAAATTACACAGACTCATCCGACGATATAGCAATGAGAAATGAGTCTGCAGTCCCAACTGATGAGGATGCCGAGTGTTTTTTCTGTAATGGAAAATATAGTGAGGATAAAAGAGGTGAAGAATGGGTAAAGTGCTTAATTTGTGAAATGTGGGTTCACGGAGATTGTGGTGGTTATGAATCTGGTATTTATATATGTGATTACTGCAAGAATTAA
Protein Sequence
MSASHKYSKRKKWEKEDMSAAIIAVQEKKMGYLKAAKHFNVPRSTLFRFVNDNDSSTESVLNKVIGRRPVLGTDIEKMLVEYILSMENKFYGLTRMDLRRLAYQLATKNNIQNAFRDGFAGRYWLKGFLKRHKEIFSIRQPTGTSQARANGFTKERVDEFYDNLDKIQADKPFPAARIFNVDESGLSIVQNLAKQNYVTILSLPPHCTHKIQPLDRTFMGPLKCYYSEEVRVFLREHNRPVTPYDVVELFGRAYIKCQTAEIAANGFKIGGIYPFNRNIFTEADYIATAADVSEDQNTQTSPNPLASPVAAFRRLENFDEAQPGPSGIPPLVTPSQISPVPIVKKRTSNRGRKPAKSAIISSSPYKKDLENAQFKKSEKEKTSQKKNVKGKGKKNVTKKSNERNITESESSDLNPAVYGNYTDSSDDIAMRNESAVPTDEDAECFFCNGKYSEDKRGEEWVKCLICEMWVHGDCGGYESGIYICDYCKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01073542;
90% Identity
iTF_01073538;
80% Identity
-