Ndro014965.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990174.1:8921148-8922960[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-10 1e-07 31.8 0.0 3 38 16 51 14 56 0.93 2 2 5.3 3.1e+03 -1.8 0.1 1 14 278 291 278 296 0.86
Sequence Information
- Coding Sequence
- ATGTCTACATCCTACAAATACAGCAAAAGAAAGAAGTGGGAGAAGGAGGATATGCCCGCTGCGATTATCGCTGTTCGAAAAAAGAGAATGGGATACTTGAAGGCAGCTAAACACTTTAACGTTCCCAGGTCTACCCTCTTTAGATTTGTTAATGATAATGACTCCTCGACTGAATCTGTAATGAATAAAGTTATTGGTCGAAGGCCAGTTTTGGGTACAGATATTGAAAACATGCTGGTTGAGTACATATTAACAATGGAGAATAAATTTTATGGACTGACCAGAATGGATTTGCGTCGGTTGGCATATCAATTAGCTATAAAAAATAATATTCAAAACGCTTTTAAGGACGGATTTGCTGGAAGATACTGGCTGAAGGGATTTTTAAAACGACATAAGGAAATTTTGTCCATAAGACAGCCAACTGCAACTTCTCAAGCAAGGGCCAATGGATTCACTAAAGAAAGAGTGGACGAGCTCTACGATAATCTTGACAAAATCCAGGCTGATAAGCCTTTCCCTGCTGCGCGCATATTCAATGTTGATGAGAGTGAATTGATAGATCTAGCGAAACAGAATTATGTGACAATTCTATCTTTGCCACCTCATTGCACGCACAAAATTCAACCTCTTGATCGTACTTTCATGGGTCCTTTAAAATGTTACTACAGTGAAGAAGTCAGGGTGTTTCTCCGGGAACATAACAGACCTGTAACACCATATGATGTTGTTGAGCTATTTGGGAGAGCCTACATCAAGTGCCAAACCGCCGAAATTGCTGCAAATGGTTTTAAAATTGGTGGAATATATCCATTTAATAGAAATATATTTACTGAAGCTGATTTCATAGCCGCTGCTGCTGATGTTTCAGAGGATGAAAACCCTCAAACGAGTCCAAATCCGCTCGACTCACCCGTGGCCACTTTTCGGCGATTGGAGAATTTCGATGAAGCTCAACCAGGGCCATCAGGAATCCAATCAATAGTTACTCCCTCTCAAATTTCTCCCGTGCCAATAGTAAAAAAGAGAACGAGCAATAGAGGCCGTAAGCCAGCAAAATCCGCAATAATTTCAAGTTCCCCTTATAAGAAAGACCTTGAGAATGCACAATTTAAAAAGTCGGGAAAGGCGAAGAAAGCACAGAAAAAAAATGTTAAAGGAAAAAGCAAGAAGAATGTAACAAAAAACACAAATGAGAGAAGTATTACAGAAAGTGAGTCATCAGATTCAAATCCTGTTATCTATGGAAATTACTCAGACTCATCCGACGATATAGCAATGAGAAATGAGTCTGCAGTCCCAACTGATGAGGATGCCGAGTGTTTTTTCTGTAATGGAAAATATAGTGAGGATAAAAGGGGTGAAGAATGGGTAAAGTGCTTAATTTGTGAATTGTGGGTTCACGGAGATTGTGGTGGTTATGAATCTGGTATTTATATATGTGATTACTGCAAGAATTAA
- Protein Sequence
- MSTSYKYSKRKKWEKEDMPAAIIAVRKKRMGYLKAAKHFNVPRSTLFRFVNDNDSSTESVMNKVIGRRPVLGTDIENMLVEYILTMENKFYGLTRMDLRRLAYQLAIKNNIQNAFKDGFAGRYWLKGFLKRHKEILSIRQPTATSQARANGFTKERVDELYDNLDKIQADKPFPAARIFNVDESELIDLAKQNYVTILSLPPHCTHKIQPLDRTFMGPLKCYYSEEVRVFLREHNRPVTPYDVVELFGRAYIKCQTAEIAANGFKIGGIYPFNRNIFTEADFIAAAADVSEDENPQTSPNPLDSPVATFRRLENFDEAQPGPSGIQSIVTPSQISPVPIVKKRTSNRGRKPAKSAIISSSPYKKDLENAQFKKSGKAKKAQKKNVKGKSKKNVTKNTNERSITESESSDSNPVIYGNYSDSSDDIAMRNESAVPTDEDAECFFCNGKYSEDKRGEEWVKCLICELWVHGDCGGYESGIYICDYCKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01073542;
- 90% Identity
- iTF_01073538;
- 80% Identity
- iTF_01073544;