Nudd048090.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Notocelia uddmanniana
Gene Symbol
-
Assembly
GCA_905163555.1
Location
LR991076.1:6010327-6015625[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00017 0.019 17.0 0.1 1 23 129 152 129 152 0.97
2 10 0.00076 0.087 14.9 0.1 2 23 178 200 177 200 0.95
3 10 0.011 1.2 11.3 1.9 2 23 224 245 223 245 0.95
4 10 5.4e-05 0.0062 18.5 1.8 1 23 249 271 249 271 0.98
5 10 0.019 2.2 10.5 1.4 1 13 276 288 276 289 0.93
6 10 0.0003 0.035 16.2 3.1 3 23 309 330 307 330 0.93
7 10 4.6e-07 5.2e-05 25.1 1.4 1 23 337 360 337 360 0.98
8 10 0.0016 0.18 13.9 0.3 1 23 366 388 366 388 0.96
9 10 1.4e-05 0.0016 20.4 2.4 1 23 394 416 394 416 0.98
10 10 1.1e-05 0.0013 20.7 1.3 1 23 422 445 422 445 0.97

Sequence Information

Coding Sequence
ATGATAAAAACTGTAAAAGTTCAATACAAAAAAGACGAGTCACCTAAGGTGAAAATGGAGATGTCTGACGATGATGACAATGGGGCTTATATATTGCAGCTAAAGGAAGAGATGTCAGACTACGAGGAGCTGAAGGACGAGGATGGCAAGCTGGCGCAGCTTCTGGCATTCGAGGAGGTCTCCGTCAAGCGGCGGAAGCGGTCCTGCGCCAAGTCTGACCTGAAATCCCGAAAACTCACGATCTCCCTCCACGCCCTCTCGAAAATGGAGAAACTGAAGAAGCCAATCGACTACGTGAGTGAGAGCAGAAAACACAAACATAATATAGAAAATCTGCTCAAACATTGCAACGGGACGCCATTTTCTAACAAAACACTGTACGGCTACATCTGTGCTTATTGCAAAGAGACCTACATAGACCCACAAGATTTGAGAGCGCACACGGAAACAGAACATAAGGACTCGGAATTCTACGACACCAAGCGAATGGACAAGAATAATATGTCAGTAAAACTTGACATAACCGATTTGAAGTGCACAGTCTGCAATGAACCATTCGACGATGTAGCGACACTAAAACAACATTTAATTAAGCAGCATGATGTGAAATTTCATCATGATGTTAAAGACTATATCATGGAGTTCAAGCTTACATCAGACGAGATTCTTAACTGCGCTCACTGTAACTCCACATTTGAGACTTTCAAGATGCTACTACAGCATATGAACGGACATTACCGGAACTATATCTGCAATGTATGTGACATGGGTTTTATAAATAAGCATAGACTGAAAAATCACGAGAGAACGCACGATTTAGGCACTTACAAATGTGAATTCTGTGATAAAGTATTCAGTACTAGAGTGCGTAAGATGTGTCACGAGAAATATACTCATAACAGTAGTGCTAGATATACAACGAACTGCCCCCATTGCGACCAGAGCTTTACCAGCTATTACCAGAGAaacagacatatgttcaacgaGCATAACACCGTTGCAGCATCCTACAAGTGCAATATATGCGATAAGAGCTTCATTTTGAAATCAAAGCTAACGTCTCACATCAAAAAAGTGCATCTAATGGAACGGAATCACATATGCCCGGAGTGCGGACAGGGATTTTTCATAAAACAGTCGCTTGATGAGCATATGATTAAGCACAACGGTGAACGAGTGCATAAATGTAATGTGTGTTTGAAAGCTTATGCAAGGAAAAAGACTCTCCGGGAACATATGAGGATACACAACAATGATAGACGGTTTAAATGTGGCGTGTGCGGATTGGCGTTTGTGCAGAAATGCAGTTTGAAGAGCCACATGCTGTCCAACCATGGGATAACTCTTTCGGAGTTTGAGAGCAGAGAGCTGAGCAGCCCGCAGGCCACTTAA
Protein Sequence
MIKTVKVQYKKDESPKVKMEMSDDDDNGAYILQLKEEMSDYEELKDEDGKLAQLLAFEEVSVKRRKRSCAKSDLKSRKLTISLHALSKMEKLKKPIDYVSESRKHKHNIENLLKHCNGTPFSNKTLYGYICAYCKETYIDPQDLRAHTETEHKDSEFYDTKRMDKNNMSVKLDITDLKCTVCNEPFDDVATLKQHLIKQHDVKFHHDVKDYIMEFKLTSDEILNCAHCNSTFETFKMLLQHMNGHYRNYICNVCDMGFINKHRLKNHERTHDLGTYKCEFCDKVFSTRVRKMCHEKYTHNSSARYTTNCPHCDQSFTSYYQRNRHMFNEHNTVAASYKCNICDKSFILKSKLTSHIKKVHLMERNHICPECGQGFFIKQSLDEHMIKHNGERVHKCNVCLKAYARKKTLREHMRIHNNDRRFKCGVCGLAFVQKCSLKSHMLSNHGITLSEFESRELSSPQAT*