Enis014492.1
Basic Information
- Insect
- Epinotia nisella
- Gene Symbol
- -
- Assembly
- GCA_932294385.1
- Location
- CAKOAM010000059.1:5887160-5894100[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0011 0.073 14.0 0.1 1 23 213 236 213 236 0.97 2 10 0.00051 0.035 15.0 0.4 2 23 262 284 261 284 0.94 3 10 0.0096 0.65 11.0 1.9 2 23 308 329 307 329 0.95 4 10 4.8e-05 0.0033 18.3 1.8 1 23 333 355 333 355 0.98 5 10 0.017 1.1 10.3 1.4 1 13 360 372 360 373 0.93 6 10 0.00027 0.018 15.9 3.1 3 23 393 414 391 414 0.93 7 10 4.1e-07 2.8e-05 24.8 1.4 1 23 421 444 421 444 0.98 8 10 0.0014 0.097 13.6 0.3 1 23 450 472 450 472 0.96 9 10 3.2e-05 0.0022 18.8 1.6 1 23 478 500 478 500 0.98 10 10 9.8e-06 0.00067 20.4 1.3 1 23 506 529 506 529 0.97
Sequence Information
- Coding Sequence
- ATGGAGGATCTAAATTCGTGTCGGTGCTGCTTGATGCGGCCGCCGGACAAGGATTTGAAGTTGCCGTACACTCGTCTCGGGCAAACGGAGATATACGCAGATATGCTGAGGGAATGCTTCGAAATACATTTACCTCTAAGCAACGACAGCGAGTGTGGTATTTGTGAGATATGCGTCGGCCGGTTGCGAGACGCCAGTGATTTTAAGCTGCAAGTGCAGCGCAGCCAAGTCGAGTTTGGGGCGCGCCTGACCCGCGTACTGGAAGATAAAGGAGATGAGTCGCCTAAAGTGAAGATGGAAATGTCAGATGACGATGACAACGGGGCTTATATACTACAGCTGAAGGAAGAAGAGATGTCGGACTACGAGGAGCTGAAGGACGAGGACAGTAAGCTGGCGGAGCTGCTGGCCTTCGAGGAGGTCACCGTCAAGCGGCGAAAGCGGTCCAGTTCCAAGCCTGACCTGAAGTCCCGAAAACTCACGCTAGCCCTCCGCACGCTCACCAAAATGGAGAAAATGAAGACGCCCATCGACAGCTCCCGGTATGTCAGCGAGAGCAGGAAACACAAACACAACATCGAAAACCTGCTCAAGCATTGTAACGGGACCCCCTTCTCCAACAAGACACTCTACGGGTACATCTGCGCCTATTGTAAAGAGACCTACGTAGAACCACAGGAATTGAGGACTCACACTGAAACTGAACACAAGAACTCTGAATTCTACGACACAAAACGAATGGACAAGAACAAcatgtccgttaaacttgacatcaccgatttgaagtgcaccgtctgcaatgaacggttcgatgatgtggcgacgttgaaaaaacacttagttaagcagcacaatgtgaagttccaccccgacgtgaaagactatataatggagttcaagctaacttcggacgagatcctcaactgcgcccactgtaactccacatttgagactttcaagatgctattacagcatatgaacggccattataggaactacatatgcaacgtatgcgatatgggcttcattaataagcacagactgaaaaatcacgagagaacgcacgacctaggcacatataagtgtgaattctgcgataaagtcttcagcactagagtgcggaaaatgtgtcatgagaaatacacgcacaacagtagcgctaggtacacaacgaactgcccgcattgtgaccagagctttaccagctactaccaaaggaacagacacatgttcaacgagcataacaccgtcgcggcatcgtacaaatgcaatatatgtgataaaagtttcattctaaaatcgaaactgacgtctcacatcaagaaggtgcacctaatggaacggaaccacatatgtcccgagtgcgggcaggggtttttcataaagcagtctctggatgagcatatgattaagcataacggcgaacgggtgcataagtgtgctgtgtgtctaaaggcgtacgctaggaaaaagactctccgggagcatatgcggatacacaacaacgatagacgtttcaagtgcggtgtttgcgggctggcgtttgtgcagaagtgcagtttgaagagccacatgctatccaaccatggGATAACACTCTCCGAGTTCGAGACTCGAGAGCTGAGCAGTCCACAAGCCACTTAA
- Protein Sequence
- MEDLNSCRCCLMRPPDKDLKLPYTRLGQTEIYADMLRECFEIHLPLSNDSECGICEICVGRLRDASDFKLQVQRSQVEFGARLTRVLEDKGDESPKVKMEMSDDDDNGAYILQLKEEEMSDYEELKDEDSKLAELLAFEEVTVKRRKRSSSKPDLKSRKLTLALRTLTKMEKMKTPIDSSRYVSESRKHKHNIENLLKHCNGTPFSNKTLYGYICAYCKETYVEPQELRTHTETEHKNSEFYDTKRMDKNNMSVKLDITDLKCTVCNERFDDVATLKKHLVKQHNVKFHPDVKDYIMEFKLTSDEILNCAHCNSTFETFKMLLQHMNGHYRNYICNVCDMGFINKHRLKNHERTHDLGTYKCEFCDKVFSTRVRKMCHEKYTHNSSARYTTNCPHCDQSFTSYYQRNRHMFNEHNTVAASYKCNICDKSFILKSKLTSHIKKVHLMERNHICPECGQGFFIKQSLDEHMIKHNGERVHKCAVCLKAYARKKTLREHMRIHNNDRRFKCGVCGLAFVQKCSLKSHMLSNHGITLSEFETRELSSPQAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072830;
- 90% Identity
- iTF_01072830;
- 80% Identity
- -