Nnoc003203.1
Basic Information
- Insect
- Nomophila noctuella
- Gene Symbol
- -
- Assembly
- GCA_958496325.1
- Location
- OY292483.1:14611534-14620548[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 7.8e-05 0.0063 17.5 0.1 1 23 198 220 198 220 0.99 2 31 0.002 0.16 13.1 0.2 3 19 254 270 252 272 0.95 3 31 5.4e-05 0.0043 18.0 0.1 2 23 304 326 303 326 0.96 4 31 1.2 94 4.4 0.2 2 20 346 364 345 366 0.89 5 31 3.9 3.1e+02 2.7 0.1 2 23 377 399 376 399 0.94 6 31 0.01 0.81 10.9 0.0 1 23 417 439 417 439 0.96 7 31 1.7e-05 0.0014 19.6 1.5 2 23 480 502 479 502 0.96 8 31 0.00034 0.028 15.5 2.0 2 23 546 568 546 568 0.97 9 31 0.00052 0.042 14.9 1.1 1 23 618 641 618 641 0.97 10 31 0.00078 0.063 14.4 0.1 1 23 701 723 701 723 0.96 11 31 0.00063 0.05 14.7 3.6 2 23 735 756 734 756 0.96 12 31 0.18 15 6.9 1.2 2 23 768 789 767 789 0.96 13 31 0.0043 0.34 12.0 1.7 1 23 799 821 799 821 0.98 14 31 0.0021 0.17 13.0 4.8 1 23 850 872 850 872 0.97 15 31 0.0039 0.32 12.1 3.3 1 23 883 905 883 905 0.98 16 31 2.9e-05 0.0024 18.8 0.5 1 23 913 935 913 935 0.97 17 31 0.00066 0.053 14.6 0.4 2 23 955 977 954 977 0.97 18 31 3.8 3.1e+02 2.7 0.3 1 23 995 1017 995 1017 0.88 19 31 0.51 41 5.5 3.5 1 23 1024 1046 1024 1046 0.96 20 31 0.014 1.1 10.4 3.1 2 23 1057 1079 1056 1079 0.95 21 31 0.0029 0.23 12.6 0.1 2 23 1102 1123 1101 1123 0.95 22 31 0.82 66 4.8 0.3 2 20 1127 1145 1126 1146 0.91 23 31 3.3 2.6e+02 3.0 3.7 2 23 1166 1188 1165 1188 0.94 24 31 0.011 0.88 10.8 0.1 2 23 1204 1225 1203 1225 0.95 25 31 2.8 2.2e+02 3.2 5.9 5 23 1235 1253 1233 1253 0.94 26 31 0.015 1.2 10.4 0.7 2 23 1264 1286 1263 1286 0.95 27 31 0.32 25 6.2 0.4 2 12 1303 1313 1303 1321 0.84 28 31 4.7 3.8e+02 2.5 1.8 2 20 1325 1343 1325 1344 0.94 29 31 0.18 15 6.9 0.5 2 23 1394 1415 1393 1415 0.93 30 31 0.0091 0.73 11.0 0.4 2 23 1426 1448 1425 1448 0.96 31 31 0.045 3.6 8.8 1.1 2 20 1486 1504 1486 1506 0.94
Sequence Information
- Coding Sequence
- ATGGCCCTCAAGCTGGGCAAATGCAGGCTCTGCCTGAAGCTCGGCGACTTTTACTCAATCTTCGCGGTAGACAATGCCGTGCAGCTTGCCGAGATGGTCATGGAATGTGCCCGGGTGAAAGTCTATGAAGGGGACGGCTTACCTGACAAGATCTGCTCGGAGTGCGTGCAGAAGCTGAGCAGTGCTTACATCTTCAAGCAGCAGTGTGAGCGCGCCGACCAGGAGTTGCGCCGCAATTATGTGCCTCCACCAGGTTTCAGCGTATCACCAACGCCGCCGAACAGACAGAGCAGTGACTCGGCTTTCTCCACGCACACCGACGTGTCGAACCAAACAAAGCCGTCGTCCTCGAACGAGGCCACGTCGTACGGCGCAGCGCCGCGCGGGCGCAAGCGCAGCCGCGAGAGCGCCGGCGACACGTCGCTCAGCGAGCGCTCGCACGACCTCGCGCCCGCCAAGCGCGTCACCGAGCTGCGCGCGCAGAAGAAGCGCCGCGCCAACTACGAGGCCGACTCCGACTACGAGGATGACGCGCCCTTCTCCCCCTACTCGGCCGGCACCGACTCCGACGAGCCCCTGGTCCAGAACCGGTTCAAGTGCGCGCAGTGCGGCAAGGCCTTCGCCTCGGCCCTCAGCCGCAACGCGCACATGCGCGTGCACAGCGCCAAGCGGGACAGGTACCTCGGCAAGGACGAGGTCGTCAGCATTCCGCGGAAGGTCGTCGCCGAGGACGCCACCGACGACGACGAGAAGCTCGCCTGCGAGAAGTGCGGGAAGACCTTCAAGCTGAACATCATGCTGAAGCGGCACTCCGACCTGTGCGGGGTGCAGGCCGAGATATCCCCCCAGAAGGAGCTGATGGTCGCTCTAGAGCCCATCGACGCGGTCGCCTCGAAGACCAGCAAGATCGAGTGTGACATCTGCACGGCAAAATTTAAAAGCGTCGATAACCTCCAGAAACATCTGCGGGTAGTTCACGCCGCGGCGCTCAAGCCGGAGCAGACGCCGCCGAAGCCGACGGCCGCCGTGTCGGTTCCCTGCGTGTTCTGTCGGAAGTCCTTCGAGGACTACTACGTGTACACGGCTCACTTCAACAGCTGCAGTAAGAAGCGGCCGCTGGAGTCGATCGAGTGTCCCGCCTGCAAGCGGGAGCTGGGCAAGCGAGCGGCGTTCTTCGTGCACTTGAAAAACCTCCACTTCGAGCCGAAGGTGCCGAAGGTGGAGCCGCCCGACGCCTCGAAGGAGACGTTCGAGTGCCGCATGTGCGGCAAGCTGCTGCCGTCGCAGGCGCAGCTCATCACGCATCTCGCCGCGCACATGTCGAAGATGGGCGAACCGGAAGATCTCAACGACGACGATTCGAGgGCCAGCACTATCGGAGACTCTGCTTCCATCGGGTCCGACTACAGCTCCTCGCAGGTGACGTCCGGCCCCCTGAAGTGTAACGTGTGCGACAAGAGCTTCACCTACAAGAAGGCCCTCGAGACGCACAAACAAAAAGTGCACACGAAGATAGAAACGTCGGTGAAGGTGGAGCCGCCCGACAAGCACACGCCGGACCTGCTGAGCGAGGCGCCCGACCCCGAGCCGGAGCCCAGCGACTCGGAGTCCAGCGGCGACGAGGGCGAGGACAACACCTGCGACATCTGCGAGAAGCAGTTCTCGTACAAGCGGCTGCTCGTGCAGCACAAGCGGACCAAGCACAACATGAGCTCCGGCACCAAGCGCGCCAAGATCAACCTCAAGGACTGCTCCGTGCGCTGCCTCATCTGCGACCTCGAGATGAAAGTGAGCGCCATCAACGAGCACAACCAGAAGCACACGTCGATCGGCATCAAGCCGCGCAACGAGTACACGTGCGCGGACTGCGGCGACAAGTTCAAGAGCTGCAGCACGCTGGCCAACCACATCAAGCTGGTGCACCGGCTGCAGCAGCCGCGGACCCGGGCGCCGCCGCAGCTGCAGGGCGGCGACGACCTGGCGGATTTTTGTGAAGTCGTTGTGACCAAGGCGGAACCCCTGGACGTGATCCAGAGTCACAACGACTTTGGGGAGGTtccgggcggcgcggcggaggGGCCGGTCGCCGACGGGCGCGGCTTCGACTGCCCGATCTGCGGCAAGACCATGCCGACGCTCATATCCCTCAAGAGGCACGTCAACTGGCATCAGAATGTTGGCAATAACCTCGAGAAGAAAATCGAGTGCTTCGTCTGTAAAGAGACTTTCCGATTCAAGGGTCACTTCAAGCTGCACATGCGGCAGCACTACCGCGACCCCGACCTGGACCCGAAGCACCTGACGTGCGGCATCTGCCAGCGCCGCAGCAAGCACCTGCGCGCCGCCCAGGCGCACATGAACTTCCACAAGCAGACGCGCTTCCAGAACAAGGACTACGAGTGCTCCATCTGCAAGCGCGTCTTCCAGCACCGCAAGGTGTACCTCTCGCACATGGCCATCCACTTCAAGCGCGGCGAGAGCGTGCAGAACACCATCGTGGGCGACGCGCTGCCGCAGACCGCCGACCGCAGCGTGTTCGACGGCACGCACACCTGCTCCCTCTGCGGCAAGGTCTGCGACTCGGAGAACTCGCTCAAGCACCACGTGCGCTGGCACAACTCCAAGTCGTCGCTGTTCGGCGCCCGCCACGAGTGCTTCGTCTGCCGGCTCGTGTTCACCAACAAGCGCCGCCTCGAGCTGCACACGCGGACGCACTACGAGGACGACAACGGCCCCTTCAAGTGCACCGTCTGCGGCAAGGGCTTCATCGACGAGGAGTACTACAGGCGACACGTCAAGGGTCACAACTTCGACCACCAGGTCCACAAGGACCGCATAGCGAAGCTGAGGAAGGACAAGGTCAAGTGCCCGATCTGCGCGCGCTTCTACCCGGACCTGATCCACCTGATCCGGCACCTGCGCCGGACCCACCCCGAGAGCAAGATGATCAAGACCGACCCggacgcgccgccgccgagctACTTCTCCTGCAAGCTCTGCGCGCGGGTGTTCCTCGACGTCAACCGGCTGCGGAAGCACGAGGAGGCGCACATGAGAAAGCCGCAGTTCTACAAGTGCAAATTCTGCGGGAAGAATTCCACTTCGATGAAAGGCCACAACATCCATATTAAATCGCACCTGTGTCAGAAGTACCTGGACGATCCCCTGAAGTGCCCGCAGTGCGACGAGAAATTCTACAAGGGCTACCACCTGCACTACCACCTGCGCGACGTGCACCAGATCACCGAGACGTGGATAGCGGAGCGGACGGAGCCCACCCTCGCCGGCCCGCTCAAGGAGCTGCAGTGCTCCATCTGCCTCAAGGTGCTCGCCAGCAAGGGCAACTACGAGCGCCACATCGACTACCACAACACGTTGCGCTGCAACTACTGCTTCGTCTACTTCAGCACTCTGAAATTCCTGGAGGGTCATCTCGCGTTCAGCTGCGAGAAGAAAAAGCTGATAGGCGACACGGAGATATATCCGAAGAAGATCAAATGCCCGCAGTGCTACAAGGCCTTCCACCTGCAGGTGAAGCTGGACTGCCACCTGCGCACGCAGCACGGCGTGCGCGTGACGCGCGAGGCGACCTCCGGCAAGAAGGAGATCGTGTGCGACTACTGCTTCCGCGTGTTCGAGAACGAGGAGGCGCTGGTCTCGCACAAGATATACCACCGCACGATCGGCTACTTCGGCTGCATATACTGCAAGAGGAAGTTCAACACGCTCACCTTGTTCCGGAAGCACAAGAACCACCACTTCTCGCAGTTGAACGTGGACAACCCGTCGAAGTGCGAGCACTGCGACGAGACGTTCGTGGCGTTCCGCGAGATGATCTACCACATGCGCGACGTGCACGGCGACGACAAGGAGTGGGTGGTCATGCCCAAGGACTCCGTGGAGGAGACGTGCCCCATATGCAACAAGACATTCTTCAACCTCCCCAAGCATCTGGTCTACCACGAGGAGAAcagGTGCAAGAAATGCGCCGAGTACTTCTACTCCCGAGCCGACTTCGACAACCACCTGTGCCCCATCGAGAGCGACGAGGACGGCGCGCCGAGCAACGAGAGCAGCCACCAGCCGGCGTACGAGGAGTGCCGGTTCTGCTTCAAGCCGATCACGCGGATCAGCTCCCGGGCGAAGCACGACCACATCCACAAGGGCTCCGGGTCGATATCCTGCCGGTTCTGCCCGCTCAAGTTCAAAACGATGGACGCGTTCAACATCCACGCGTTCTCGCACCGCAGCAGGAAGTACACCAAGCGGCCGATCAAGTGCCGGGCGTGCGGCGAGAAGTTCGTCAAGTACGGGCCGTTCATGAAGCACATGAAGACGGTGCACAAGTCGACGAAGAAGGTGCACTACCGCGCGCAGGTGCTGCCCGAGCGCTGCGTCGTCTGCGGCGACGACTTCCCCAACCTGCACAACCACTACCGCGCGCACCTGCAGAACCGCTGCCCGCTCTGCCGCAAGTACTTCACGTCCGCGCGCCTGTTCGCGCGCCACGCCTGCGACCGCGCCGACGCCGAGCCCGCCAAGGTGTTCGAGTGCGACGCCAACCTGCCCGCGCTCATCGACGCCTACGTGCCCAAGGACTTGAAGGACGACGAGAAGTTCTACGGCCACAGCGGCGAGGAGGACGAGGAGGAGACTCCCGCGCCGCCCCCCAAGCGGAACCGCGACCGGAAGCCCATCATCACCATGGACGACGACAGCCAGACCGGCGATCCCGCCGAGTCCATAACTTTCTCCGAGGACGAGAAAAATCTACACCTGATGGTCTCGTCCCCGATAATATCAGATGTGCTGTCGCTTTACGAAAACAAGGACGAAGTTGGCAAAGATAAGGACGTCGTTATCTTGACTGACGACGATTCGATGGACATCGATAGTAATATACCGGTCATAACGATTGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFAVDNAVQLAEMVMECARVKVYEGDGLPDKICSECVQKLSSAYIFKQQCERADQELRRNYVPPPGFSVSPTPPNRQSSDSAFSTHTDVSNQTKPSSSNEATSYGAAPRGRKRSRESAGDTSLSERSHDLAPAKRVTELRAQKKRRANYEADSDYEDDAPFSPYSAGTDSDEPLVQNRFKCAQCGKAFASALSRNAHMRVHSAKRDRYLGKDEVVSIPRKVVAEDATDDDEKLACEKCGKTFKLNIMLKRHSDLCGVQAEISPQKELMVALEPIDAVASKTSKIECDICTAKFKSVDNLQKHLRVVHAAALKPEQTPPKPTAAVSVPCVFCRKSFEDYYVYTAHFNSCSKKRPLESIECPACKRELGKRAAFFVHLKNLHFEPKVPKVEPPDASKETFECRMCGKLLPSQAQLITHLAAHMSKMGEPEDLNDDDSRASTIGDSASIGSDYSSSQVTSGPLKCNVCDKSFTYKKALETHKQKVHTKIETSVKVEPPDKHTPDLLSEAPDPEPEPSDSESSGDEGEDNTCDICEKQFSYKRLLVQHKRTKHNMSSGTKRAKINLKDCSVRCLICDLEMKVSAINEHNQKHTSIGIKPRNEYTCADCGDKFKSCSTLANHIKLVHRLQQPRTRAPPQLQGGDDLADFCEVVVTKAEPLDVIQSHNDFGEVPGGAAEGPVADGRGFDCPICGKTMPTLISLKRHVNWHQNVGNNLEKKIECFVCKETFRFKGHFKLHMRQHYRDPDLDPKHLTCGICQRRSKHLRAAQAHMNFHKQTRFQNKDYECSICKRVFQHRKVYLSHMAIHFKRGESVQNTIVGDALPQTADRSVFDGTHTCSLCGKVCDSENSLKHHVRWHNSKSSLFGARHECFVCRLVFTNKRRLELHTRTHYEDDNGPFKCTVCGKGFIDEEYYRRHVKGHNFDHQVHKDRIAKLRKDKVKCPICARFYPDLIHLIRHLRRTHPESKMIKTDPDAPPPSYFSCKLCARVFLDVNRLRKHEEAHMRKPQFYKCKFCGKNSTSMKGHNIHIKSHLCQKYLDDPLKCPQCDEKFYKGYHLHYHLRDVHQITETWIAERTEPTLAGPLKELQCSICLKVLASKGNYERHIDYHNTLRCNYCFVYFSTLKFLEGHLAFSCEKKKLIGDTEIYPKKIKCPQCYKAFHLQVKLDCHLRTQHGVRVTREATSGKKEIVCDYCFRVFENEEALVSHKIYHRTIGYFGCIYCKRKFNTLTLFRKHKNHHFSQLNVDNPSKCEHCDETFVAFREMIYHMRDVHGDDKEWVVMPKDSVEETCPICNKTFFNLPKHLVYHEENRCKKCAEYFYSRADFDNHLCPIESDEDGAPSNESSHQPAYEECRFCFKPITRISSRAKHDHIHKGSGSISCRFCPLKFKTMDAFNIHAFSHRSRKYTKRPIKCRACGEKFVKYGPFMKHMKTVHKSTKKVHYRAQVLPERCVVCGDDFPNLHNHYRAHLQNRCPLCRKYFTSARLFARHACDRADAEPAKVFECDANLPALIDAYVPKDLKDDEKFYGHSGEEDEEETPAPPPKRNRDRKPIITMDDDSQTGDPAESITFSEDEKNLHLMVSSPIISDVLSLYENKDEVGKDKDVVILTDDDSMDIDSNIPVITID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00365121; iTF_00961169;
- 90% Identity
- -
- 80% Identity
- -