Nmel006426.1
Basic Information
- Insect
- Nomia melanderi
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_003710045.1
- Location
- NW:578851-584198[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.9e-115 3.5e-111 370.3 37.3 1 300 29 327 29 327 0.97 2 3 0.0036 33 2.7 3.2 122 172 327 377 326 384 0.91 3 3 0.05 4.6e+02 -1.1 5.7 194 238 358 401 345 402 0.57
Sequence Information
- Coding Sequence
- ATGGAAGCAGCAATAGCTGGACGTAGGCGGACTGCCGCAAGACATTCAGCAGAGGATCAGGCTCTTGATCAGATAGCCAAGGAGGCAGAAGCTAGATTAGCCGCAAGGAGACAGGCAAGAGCTGAAGCAAGAGAAATACGAATGCGTGAATTAGAAAGACAACAAAAAGAGGCAGAAGAGAATGCGGATAGAGTTTACGATATGTGTTCAGCCGATGTTAATAGAACAATGAGAGTAACACCGGATTCCGTAAGGGCATCGCGTCTCCTTAcgaattctaataattttcaatccaGTCGTAGATCTTctgaagattctttggaaGATGCTGGCCTAAGTAGAGATCTTAGGTTAGAGCTGAAGGAGTTCGAGGAGAAATTTAGGAAAGCTATGATAGCTAATGCTCAGTTAGACAATGAAAAATCTTCTTACGCCTATCAAGTTGATTTGTTGAAAGACAAGTTGGAAGAATTAGAAGAAACAGTTGCACAACTTCGTAGAGAACTTAGGGAAAAGAACAGAGAATCCGAACAATTGAAAAGAATCAGTCAAAGATTAAAGGAAGAGTTAGACATATGCCATGCACAATTAATAGAAAGAGATACGCTTATAcaagaaAATGGTTTAGTTATTCTCGAGGACGAGGAGAGTGAAAACGAAGATAACGAGGTTGAAAATGGTCCACGTCCAAGACGAAGAGTACTAGTCAGTACAGAAGCAGCAGAATTACTGCAGAATGCTGGAAAGGGTTCATTAGATGTTCGGCTGAGAAAATTTGCTTCTGAAAAGAAGGAATTACAGGATGAAATACGGCATTTAAGATTGGAATTAGAAGAGACCAGGAACCGTATTAGGTCCGAGAAATCGCCTGGTTCAGTATTAGGTTGTTTGTCAGATTCCGAGGACGTGCAACGGGAAGCGAATAAACTGTTAGCCGATTACAAATTCAAGTTGCAAAAAGCAGAGCAAGATATGTCAACATTACAAGCCACTGTAGCTAGGCTAGAGAGTCAAGTGATACGTTACAAATCAGCTGCGGAGGCATCAGAGAAAGCGGAGGATGAATTGAAAGTTGAGAAAAGGAAACTTCAAAGAGAAGTTAGAGAGACTCAAGGCCGCGTTGAAGAATTAGAGACAGCAAATTCTCATCTACAAAGGCGATTGGACAAACTTAAAAACGCAAAATCGGCTCTCCTGAAAGAGCTTTGA
- Protein Sequence
- MEAAIAGRRRTAARHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCSADVNRTMRVTPDSVRASRLLTNSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETVAQLRRELREKNRESEQLKRISQRLKEELDICHAQLIERDTLIQENGLVILEDEESENEDNEVENGPRPRRRVLVSTEAAELLQNAGKGSLDVRLRKFASEKKELQDEIRHLRLELEETRNRIRSEKSPGSVLGCLSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00966027;
- 80% Identity
- -