Nmel003851.1
Basic Information
- Insect
- Nomia melanderi
- Gene Symbol
- -
- Assembly
- GCA_003710045.1
- Location
- NW:1066016-1070949[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.1e-13 5.3e-10 37.9 0.0 1 39 290 329 290 333 0.90 2 4 1.3e-12 1.6e-09 36.3 0.1 2 39 345 382 344 385 0.94 3 4 4.6e-19 5.9e-16 57.0 0.0 2 45 400 444 399 444 0.97 4 4 5.2e-19 6.8e-16 56.8 0.1 1 42 451 493 451 494 0.97
Sequence Information
- Coding Sequence
- ATGATTTTGTTACAGTCATTGTTGAAAACGGCCGATCAGCTGAAAATCAAGGGTCTCTGCGAGGTGCCGGAGAGCAGGGACGGTCCGCCATCGGTAAGCTTGAGCTCGCCGCCACGTGAACCTGGCACACCCAGGATAAACTTCAGCAAGCTAAAGAGACACCATCCACGGTACAAACGAGCAAGAACCACGTTCGAGCCTCGTGCGACGGACTCGAGGCACTACGACAGGTATAAAGAGGAGGAATCGAACGAGAATTACAATCCAGAGAACAAAGAGAATCACAGAGACTGGCAGGCCGAAGATGAAGATTGCACGGAGGGTACAACAGCAACAGTAGTTTTGGAAACGTGCCAGCGGaccaataataacaacaataacaataacaacaacaacaataataataacaacagcGGTAACGGTAcaaacaacaataacaacgGTGACATGTTTTGTCATACAGGGCTCGGACACTATGGACACCATCCGGATCCTGGGGAAGTCGACCTGCCCCCAGAGACCCAACCCACACCACCCAGTGCCACATTAGTTGGCACTACCATCACCCACTTAAGAGATCCGGATCATCATTCTACAGAGATTCAGAATTGTGACAGTGTGAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACGATCGACATCGATAGTCACATGTCGGATCGGGCGAGCGTCAGTTCGAAGAACGCAGCGGATAGCGACAACATGATGATGATCACGCCGGAGCTGCTCGGTTTAATGCCCTCTGGAAGTTCGGTTCACTCGGATTCCGGCGAGAACAATTCGAGGGGCCATTCCGGACAGTCGAGCTCCCATCATCACGGTTCGAAATCATGGACTCAGGAAGACATGGATGCCGCATTGGAAGCATTAAGGAACCACGACATGAGTCTGACAAAAGCCTCCGCAACCTTCGGCATACCGTCGACGACGTTATGGCAAAGAGCGCATCGGTTGGGCATAGACACGCCAAAAAAGGATGGACCAACAAAGTCGTGGAGCGACGAGAGTCTGAACAACGCCCTTGAAGCGCTAAGAACTGGCACGATCTCGGCGAACAAGGCTTCGAAAGCGTTCGGCATACCTTCCAGCACGTTGTACAAAATCGCGAGGAGAGAAGGTATTAGATTAGCTGCGCCTTTCAACGCCAGTCCTACCACTTGGTCGCCCGCCGACCTGGATCGAGCTTTGGAAGCTATCAGGTCCGGTCAGACGTCCGTGCAGAGAGCATCCACTGAATTCGGTATACCGACAGGAACCTTGTACGGTAGATGTAAGAGGGAAGGAATCGAATTGAGCAGGAGTAATCCTACGCCATGGAGCGAGGATGCTATGACCGAAGCCCTCGAAGCTGTCAGATTGGGTCATATGAGTATCAATCAGGCAGCCATTCACTATAATCTACCCTATTCGTCGTTGTACGGTCGTTTCAAGAGGGGGAAATACGAAGAACCAGCAGTCGGTGATCTATCGCAAGACGGGAGCAGTCCACATTTCCATCAGAGTCCGAATCAGAATCATTCGTCCGCCGTTCCGGATCAAATGCCTTACCAAGGCAGCTGA
- Protein Sequence
- MILLQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFSKLKRHHPRYKRARTTFEPRATDSRHYDRYKEEESNENYNPENKENHRDWQAEDEDCTEGTTATVVLETCQRTNNNNNNNNNNNNNNNNSGNGTNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDLSQDGSSPHFHQSPNQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00306165;
- 80% Identity
- -