Nlat014210.1
Basic Information
- Insect
- Nomada lathburiana
- Gene Symbol
- -
- Assembly
- GCA_963667235.1
- Location
- OY763909.1:11090981-11093681[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.8e-13 1.1e-09 37.9 0.0 1 39 303 342 303 346 0.90 2 4 2.4e-12 3.3e-09 36.3 0.1 2 39 358 395 357 398 0.94 3 4 8.7e-19 1.2e-15 56.9 0.0 2 45 413 457 412 457 0.97 4 4 6.3e-19 8.7e-16 57.4 0.1 1 42 464 506 464 509 0.96
Sequence Information
- Coding Sequence
- ATGTATCCTGTGTGCGCTCTGTTGCAGTCGTTATTGAAAACAGCTGATCAGCTGAAGATCAAAGGACTGTGCGAGGTGCCGGAAACCAGAGACAGCCCACCATCCGTGAGTTTGAGTTCGCCACCGAGAGAACCCGGCACGCCTAGGATAAATTTTACCAAACTCAAGAGGCACCATCCCAGGTACAAGAGAGCCAGAACCACGTTCGAGCCTCGTGCGACAGACTCGAGGCATTACGACCGGTACAAAGAGGAGGAATTGAACGACAACTATAACCGGGAGAACAAAGAGAACCATAGGGACTGGCAAGCCGAAGATGAAGAGTGCACAGAGGCAACCACGGGAGCAGTAGTCTTGGAAGCTTGCCAACGCAACAGTAACAGCAGCAGTAGCACCAGTACCGGGAACAACAACCACAACAGCACTgcaaataacaataacaatagtaACGGGAACAGCGcgagcagcaacaacaacaacgGTGACATGTTTTGTCATACAGGTCTTGGCCATTACGGGCATCATCCGGATCCCGGGGAGGTCGACCTACCACCGGAGACCCAACCTACGCCACCGAGTGCCACGTTGGTCGGTACTACGATTACGCATCTAAGGGATCCGGATCATCATTCGACAGAGATTCAGAATTGCGACAGCGTGAAGATCAAGTTTGAAACGTTACATACGATGGATTCCTCGGATACGATCGACATAGACAGCCACATGTCCGATCGAGCGAGCGTCAGTTCGAAAACGGCAGCCGACAGCGACAACATGATGATGATCACGCCCGAGTTGCTGGGTCTGATGCCTTCTGGAAGTTCGGTTCACTCGGATTCCGGCGAAAATAACTCGAGAGGTCACTCCGGACAGGCCGGCTCGCATCATCATGGCTCGAAATCGTGGACCCAAGAGGACATGGATGCCGCGTTGGAAGCATTACGAAATCACGATATGAGCCTGACGAAAGCCTCTGCAACATTCGGTATACCATCGACGACTCTCTGGCAAAGGGCACACCGGCTGGGAATCGACACACCCAAGAAGGACGGCCCCACCAAGTCGTGGAGCGACGAGAGCTTGAACAACGCGCTCGAAGCGCTGCGAACCGGCAcgatatcggcgaacaaagcTTCGAAAGCGTTCGGCATACCTTCCAGTACCCTGTATAAAATCGCGCGAAGAGAAGGCATCAGGCTGGCGGCGCCGTTCAACGCGAGTCCTACCACTTGGTCTCCAGCCGACCTGGACCGCGCCCTCGAGGCGATACGCTCCGGGCAAACGTCTGTTCAGAGAGCATCCACGGAATTCGGCATACCGACCGGAACGTTGTACGGACGATGCAAGAGAGAGGGAATCGAACTTAGCAGAAGCAATCCCACACCCTGGAGCGAGGACGCTATGACAGAAGCTCTCGAAGCTGTTAGATTAGGCCACATGAGCATCAATCAGGCGGCTATCCACTATAATTTACCATACTCTTCTTTGTACGGTCGGTTCAAGAGGGGAAAGTACGAGGAGTCGGCGGTCGGCGATATATCCCAAGACGGTAGCAATCCTCATTTTCATCAAAGTCCAACTCAGAATCATACGTCCGCCGTGCCGGACCAAATGTCGTATCAAGGTAGCTGA
- Protein Sequence
- MYPVCALLQSLLKTADQLKIKGLCEVPETRDSPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRARTTFEPRATDSRHYDRYKEEELNDNYNRENKENHRDWQAEDEECTEATTGAVVLEACQRNSNSSSSTSTGNNNHNSTANNNNNSNGNSASSNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKTAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQAGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEESAVGDISQDGSNPHFHQSPTQNHTSAVPDQMSYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00306165;
- 80% Identity
- -