Ngoo002226.1
Basic Information
- Insect
- Nomada goodeniana
- Gene Symbol
- bab1
- Assembly
- GCA_963969485.1
- Location
- OZ018300.1:2775188-2787709[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.8e-13 1.3e-09 37.6 0.0 1 39 409 448 409 452 0.90 2 4 2.1e-12 3.9e-09 36.0 0.1 2 39 464 501 463 504 0.94 3 4 7.6e-19 1.4e-15 56.6 0.0 2 45 519 563 518 563 0.97 4 4 5.5e-19 1e-15 57.1 0.1 1 42 570 612 570 615 0.96
Sequence Information
- Coding Sequence
- atGGAGACGGATCGTTATTGGGGCGTGCACTACAGCGGCGGCATGGCCGGGCAGCATTACTGCCTGCGCTGGAACAACTATCAATCGAACATGACGTCCGTCTTTCATCAGCTCCTCCAAACGGAAGCTTTCGTCGATGTTACCTTGGCGTGCAACGAAGCTTCCTTGAAAGCGCACAAGGTGGTACTCTCAGCGTGCAGTTCCTACTTTCAAAAGCTTCTGCTTTCGAATCCCTGCAAGCATCCAACAATTATTATGCCGCAGGACGTGTGTTTCAATGATCTGAAGTTCATCATAGAGTTCGTCTACAGGGGAGAAATCGACGTTTCGCAAGCAGAACTTCAGTCGTTATTGAAAACAGCCGATCAGCTGAAGATCAAAGGACTGTGCGAGGTGCCGGAGACCAGGGACGGCCCACCATCCGTGAGTTTGAGTTCGCCACCGAGAGAACCCGGCACGCCTAGGATAAATTTTACCAAACTGAAGAGGCACCATCCGAGGTACAAGAGGGCCAGAACCACGTTCGAGCCTCGCGCGACAGACTCGAGGCATTACGACCGTTACAAAGAGGAGGAACTGAACGACAACTATAACCGGGAGAACAAAGAGAACCATAGAGACTGGCAAGCCGAAGATGAAGAGTGCACAGAGGCAACCGCGGGAGCAGTAGTCTTGGAAGCTTGCCAGCGCAACAGTAACAGCAGCAGTAGCACCAGTACCGGGAACAACAACCACAACAGCACTgcaaataacaataacaatagtaACGGGAACAGCGcgagcagcaacaacaacaacgGTGACATGTTTTGTCATACAGGTCTTGGCCATTACGGGCATCATCCGGATCCCGGGGAGGTCGACCTACCACCGGAGACCCAACCTACGCCACCGAGCGCCACGTTGGTCGGCACTACGATTACGCATCTAAGGGATCCGGATCATCATTCGACAGAGATTCAGAATTGCGACAGCGTGAAGATCAAGTTTGAAACGTTACATACGATGGATTCCTCGGATACGATCGACATCGACAGCCACATGTCCGATCGAGCGAGCGTCAGTTCGAAAACGGCAGCCGACAGCGACAACATGATGATGATCACGCCCGAGTTGCTGGGTCTGATGCCTTCTGGAAGTTCGGTTCACTCGGATTCCGGCGAAAATAACTCGAGAGGTCACTCCGGGCAGGCCGGGTCCCATCATCACGGCTCGAAATCGTGGACCCAAGAGGACATGGACGCCGCGTTGGAAGCATTACGAAATCACGATATGAGCCTGACGAAAGCCTCTGCAACATTCGGTATACCCTCGACGACTCTCTGGCAAAGGGCACACCGGCTGGGGATCGACACACCCAAGAAGGACGGCCCCACCAAGTCGTGGAGCGACGAGAGCTTGAACAACGCGCTCGAAGCGCTGCGAACCGGCAcgatatcggcgaacaaagcATCGAAAGCGTTCGGCATACCGTCCAGCACCCTGTATAAAATCGCGCGAAGAGAAGGCATCAGGCTGGCGGCGCCGTTCAACGCGAGTCCAACCACTTGGTCTCCGGCCGACCTGGACCGCGCCCTCGAGGCCATACGCTCCGGGCAAACGTCCGTTCAGAGAGCGTCCACGGAATTCGGTATACCGACCGGAACGTTGTACGGCCGATGCAAGAGAGAGGGAATCGAACTTAGCAGAAGCAATCCGACACCCTGGAGCGAGGACGCTATGACAGAGGCTCTCGAAGCTGTTAGATTAGGCCACATGAGCATCAATCAGGCGGCTATCCACTATAATTTACCATACTCTTCTTTGTACGGTCGGTTCAAGAGGGGAAAGTACGAGGAATCGGCGGTAGGCGATATATCCCAAGACGGTAGCAGCCCTCACTTCCATCAAAGTCCAACCCAGAATCATACGTCCGCCGTGCCGGACCAAATGTCGTATCAGGGTAGCTGA
- Protein Sequence
- METDRYWGVHYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPETRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRARTTFEPRATDSRHYDRYKEEELNDNYNRENKENHRDWQAEDEECTEATAGAVVLEACQRNSNSSSSTSTGNNNHNSTANNNNNSNGNSASSNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKTAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQAGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEESAVGDISQDGSSPHFHQSPTQNHTSAVPDQMSYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00306165;
- 80% Identity
- iTF_01067702;