Nfab008004.1
Basic Information
- Insect
- Nomada fabriciana
- Gene Symbol
- -
- Assembly
- GCA_907165295.1
- Location
- OU015697.1:4112762-4115860[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.7 3.6e+02 2.1 0.1 2 18 260 276 259 276 0.91 2 11 0.0015 0.15 12.7 0.1 1 21 290 310 290 311 0.94 3 11 0.00052 0.05 14.2 3.0 1 23 369 391 369 391 0.97 4 11 9.8e-07 9.4e-05 22.8 1.8 2 23 451 472 450 472 0.97 5 11 2.8e-05 0.0027 18.2 0.7 1 23 477 500 477 500 0.96 6 11 1.3e-06 0.00012 22.4 0.6 1 23 537 559 537 559 0.98 7 11 7.1e-07 6.9e-05 23.2 0.9 1 23 569 591 569 591 0.96 8 11 4.1e-06 0.00039 20.8 1.3 1 23 597 619 597 619 0.99 9 11 1e-05 0.00098 19.6 0.2 1 23 625 647 625 647 0.98 10 11 0.00027 0.026 15.1 4.3 1 23 653 675 653 675 0.96 11 11 0.00038 0.036 14.6 0.3 1 21 681 701 681 702 0.94
Sequence Information
- Coding Sequence
- ATGGAAGTTTTGAAAAACCAAGAGTTAGTTGACACACACGAGAAAATATATGGGGATGAATGTCGGATTTGTTTAAAGAGAGCTGCGGATATTTGTGAAGTTTTTAGAAATGGGGACGCTATTCCTCGGAAACTTATGGCTGTCGCCTCTGTACAGGTTGTAGAAGGAGACGGTTTACCTCCAGTGATCTGTTTGCCTTGTAATCAACGTTTGGATGAGTCCTACGATTTTAAGTGTCGAATACAAAACTCTGACGAGAAACTTCGACAGATTCTCAAACTAAAGTCTTCTTCAAACGATTCTGTTACCAGCGCCAGTATAGTTACAGCAATAATTGCTGATGTGATATCTAGTGTAATATCTACAGAAAAGGAAAATACAGAGAAGCAAGATATTTGTTCTACGAACTTTTGCCCTGACAATTTTTGTTTCGCTAAGGACGATACGCCTTATTGTCTAAATTCGGACAAAAATTTCTTCTCTTACGATAAAGAGTCACAAAGTCAATTAAATAGTACACAGCAAAAGATATGCCTAGAAAATGTAAATGTTTATAAAAGTCTGTTAGAGAGTGATCATGCGAGACCAATTAAAGAAGAAGCATTGTCCTTGTTGGACGACCGTGTGGTACAAAATTCGGATACCTCGTTAAAGGTAGAAGGAAATGACGCGTCTGGACCTCAGCAGTTGTTAGATGAAACATCGAAAACGGATAGTATACAAAATACTATACAGGATGATGAAGAGAAACCATTAATTTCACGCACAGCTAGATTACGCTGTGCACAATGTATTAAGTCGTTCCAAACAAAAGTGGCCTTGCAAAGAGATGCCAATAACGTACATAAACGTAAAACGAAATTACGTTATGTTTGTTACATTTGCGATAAACAGTATTCAACTCTTGCAAAAGTGAAAAATCATATAGCAATGTGCTATGAGTCTCATAGCAGGAAAGAAGGTGTTCGAGATAAAAGGATCAATCACGAACGGAGGAAAAGAATGGCAAGTGTACAAGATAAAAGAATTAATAATATTCAAGCCAAGAGGGCGAAAATTCCAAAAAACGAAGACACTCTTAAAGAACAAAGAAAAGGTCTGAAATTCATGTGCAAAGTTTGTTCAAAACAATTCACTTATCAAAAATCGTTTATCACTCATGCGAAAAATCATTCGGAGTATAAAACGGAAGAATTGGACGATTCGTCCCAGTGCTCAGCAAAAGAAAGGTCGAGCGAAATGGTTGAGGAAGAGGAAGAGAACGAGAACGAGAACGAGAACGAGAACGAAAACGAGGAAGAGGAAGATGAAGAGGATGAGGAAGATGAAAATCTTCCTGCTGAAAGTTTACAATGTACCCAATGCGGGAAGTTGTTCGCAACAAAACGAAATCTTAAAAGGCATCTTTCCACACATAGTGGGCTAAAATATACTTGCGGAACGTGTGGTAAAGGATTTTCAAGAGTAGACAAATTAAAGGATCATGAACAATCAAAACACAAGGTCGAATTATTTGATAACTCTGACTTGGACGATAAAGAAGATATGGATAATATAAATAAAGAAGACTGTCTAGGAAGACGGAAAAAGGATCGGCACGATAAACCGCATAAATGTGCCATCTGTCCTAAAACTTTCGCACAGGCACAGTCCTTAGAAAATCACATGGAACGGCACACGCGTGTCAAAGAAACTCAGAAAAGATTTCTTTGCGAAGTCTGCAGCAAATGTTTTGCACAAAGTGGTTCCCTGGTTGCTCACATGCGTACACATACTGGAGTCAAACCCTATGTTTGCAACGTATGCAGCCGAGGTTTCACAAAGAGCACTTATCTGCAATTGCATTTGCGTACGCATAGCGGAGAAAAACCTTACATTTGTCAGTATTGTAGCCGGGCTTTTGCACGCGCGAATACTTTGGCAAGACACATAACGATGCATACAGGGGAAGCGAAGTACCATTGTCAAATTTGTACAAAATCATTTAGAAGACTGACCTCACTCAATGAACACAACTACACACACACCGGCCAGAGACCATACGCGTGCAAAATATGTACAAAGAGATATAACAATGCTGGATCACTTTATGCGCATACAAAAAAGTGCAAGGCGCAACAACTCTCTAATACTGCTTTCGCGGTCTCCGTGGAAAATTCTGTGTCGCAATCAGAGATAAATGAATCCCAAGTTTTGATTTATTCGCAGAGGAAATTAGTAGAGGATGCAATTGTGGGACAAGTTACGCCCATGCCACAGTACATGATTGCAAATGTACACAATCAAAAGAATCTGGGATCAAATATTATACCACCGTTTACAGTGGAAGACCCAAATGTTTATACAATTAATTCGAAGCAATTTAAGAATCCCTATTATACAATTTATCCAAACATGTAA
- Protein Sequence
- MEVLKNQELVDTHEKIYGDECRICLKRAADICEVFRNGDAIPRKLMAVASVQVVEGDGLPPVICLPCNQRLDESYDFKCRIQNSDEKLRQILKLKSSSNDSVTSASIVTAIIADVISSVISTEKENTEKQDICSTNFCPDNFCFAKDDTPYCLNSDKNFFSYDKESQSQLNSTQQKICLENVNVYKSLLESDHARPIKEEALSLLDDRVVQNSDTSLKVEGNDASGPQQLLDETSKTDSIQNTIQDDEEKPLISRTARLRCAQCIKSFQTKVALQRDANNVHKRKTKLRYVCYICDKQYSTLAKVKNHIAMCYESHSRKEGVRDKRINHERRKRMASVQDKRINNIQAKRAKIPKNEDTLKEQRKGLKFMCKVCSKQFTYQKSFITHAKNHSEYKTEELDDSSQCSAKERSSEMVEEEEENENENENENENEEEEDEEDEEDENLPAESLQCTQCGKLFATKRNLKRHLSTHSGLKYTCGTCGKGFSRVDKLKDHEQSKHKVELFDNSDLDDKEDMDNINKEDCLGRRKKDRHDKPHKCAICPKTFAQAQSLENHMERHTRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRGFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHNYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQQLSNTAFAVSVENSVSQSEINESQVLIYSQRKLVEDAIVGQVTPMPQYMIANVHNQKNLGSNIIPPFTVEDPNVYTINSKQFKNPYYTIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118159;
- 90% Identity
- iTF_01068449; iTF_01069124; iTF_01066419; iTF_01069828; iTF_01067094; iTF_01067768; iTF_01070525;
- 80% Identity
- -