Basic Information

Insect: Nomada lathburiana
Gene Symbol: -
Assembly: GCA_963667235.1
Location: OY763902.1:16265583-16268655[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.3 3.3e+02 2.1 0.1 2 18 261 277 260 277 0.91

2 11 0.0017 0.13 12.8 0.1 1 21 291 311 291 312 0.94

3 11 0.00059 0.046 14.2 3.0 1 23 370 392 370 392 0.97

4 11 1.1e-06 8.6e-05 22.8 1.8 2 23 444 465 443 465 0.97

5 11 3.2e-05 0.0024 18.2 0.7 1 23 470 493 470 493 0.96

6 11 1.4e-06 0.00011 22.5 0.6 1 23 530 552 530 552 0.98

7 11 8.1e-07 6.2e-05 23.2 0.9 1 23 562 584 562 584 0.96

8 11 4.6e-06 0.00036 20.9 1.3 1 23 590 612 590 612 0.99

9 11 1.2e-05 0.00089 19.6 0.2 1 23 618 640 618 640 0.98

10 11 0.00031 0.024 15.1 4.3 1 23 646 668 646 668 0.96

11 11 0.00043 0.033 14.7 0.3 1 21 674 694 674 695 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.3	3.3e+02	2.1	0.1	2	18	261	277	260	277	0.91
2	11	0.0017	0.13	12.8	0.1	1	21	291	311	291	312	0.94
3	11	0.00059	0.046	14.2	3.0	1	23	370	392	370	392	0.97
4	11	1.1e-06	8.6e-05	22.8	1.8	2	23	444	465	443	465	0.97
5	11	3.2e-05	0.0024	18.2	0.7	1	23	470	493	470	493	0.96
6	11	1.4e-06	0.00011	22.5	0.6	1	23	530	552	530	552	0.98
7	11	8.1e-07	6.2e-05	23.2	0.9	1	23	562	584	562	584	0.96
8	11	4.6e-06	0.00036	20.9	1.3	1	23	590	612	590	612	0.99
9	11	1.2e-05	0.00089	19.6	0.2	1	23	618	640	618	640	0.98
10	11	0.00031	0.024	15.1	4.3	1	23	646	668	646	668	0.96
11	11	0.00043	0.033	14.7	0.3	1	21	674	694	674	695	0.94

Sequence Information

Coding Sequence: ATGGAAGTTTTGAAAAACCAACAGTTAGTTGACACATACGAGAAAATATATGGGGATGAAtgtcgaatttgtttaaagagagcTGCGGAAATTTGTCAAGTTTTTAGAAATGGGGACGCTATTCCTCGGAAACTTATGGCTGTCGCCTCTGTACAGGTTGAAGAAGGAGACGGTTTACCTCCAGTGATCTGTTTGCCTTGTAATCAAAGTTTGGATGCGTCCTATGATTTTAAATGTCGAATACAAAACTCTGACGAGAAACTTCGACAGATTCTCAAACTAAAGTCTTCTCCAAGCGATTCTGTTACCGGCGCCagtatagttacagcaataaTTGCTGATGTGATATCTAGTGTAATATCTACAGAGAAGGAAAATACAGAGAAGCAAGATATTTGTTCTACGAACTTTTGCCccgacaatttttgtttcgctaAGGACGACACGCCTTATTGTCTAAATTCGGACAAAAATTTTTTCTCTTACGATAAAGAGTCACAAAGTCAATTAAATAGTACACAGCAAAAGATATGCctagaaaatgtaaatgtttGTAAAAGTCTGTTAGAGAATGATCATGCGAGACCAgttaaagaagaagaagcgttGCCTTTGTTGGACGCCCATGTGGTACAAAATTCGGATACCTCGTTAAAGGTAGAAGGAAACGATGCGTCTGGACATCAGCAGTTGTTAGATGAAACATCAAAAACGGATAGTATACAAAATACTATACAGGATGATGAAGAGAAACCATTAATTTCACGCACAGCTAGATTACGCTGTGCACAATGCATTAAGTCGTTCCAAACAAAAGTGGCCTTGCAAAGGGATGCCAATAACGTACATAAACGTAAAACGAAATTACGCTATGTTTGTTACATTTGCGATAAACAGTATTCAACTCTTGCAAAAGTGAAAAATCATATAGCAATGTGCTATGAGTCTCATAGCAGGAAAGAAGGTGTTCGAGATAAAAGGATCAATCATGAACGGAGGAAAAGAATTGCAAGTGTTCAAGATAAGAGGCTTAATAATATTCAAGCCAAGAGAGTGAAAATTCAAAAAAACGAAGACACTCTCAAAGAACAACGAAAAGGTCTGAAATTTATGTGTAAAGTTTGTTCAAAACAATTCACTTATCAAAAATCTTTTATCACTCATGCGAAAAATCATTCGGAGTATAAAACAGAAGAATTGGACGATTCCTCTCAGTGTTCAGCGAAAGAAAGGTCGATCGAAATAGttgaggaagaggaagagaatgaggaagaggaagatgaAGAGGATGAGGATGAGGAAGATGAAAATCTTCCTGCCGAAAGTTTACAATGTACCCAATGCGGGAAGTTGTtcgcaacgaaacgaaatcttAAAAGGCATCTTTCCACACACAGTGGGCTAAAATATACTTGCGGAACGTGTGGTAAAGGATTTTCGAGAGTAGACAAATTAAAGGATCATGAACAATCGAAACACAAGATCGAATTATTTGATAACTCTGACTTGGAAGATAAAGAAGATAtggataatataaataaagaagaCTGTCTAGGAAGACGGAAGAAGGATCGTCACGATAAACCGCATAAATGTGCCATCTGTCCTAAAACTTTCGCACAGGCCCAGTCGTTAGAAAATCACATGGAACGGCACACGCGTGTAAAAGAAACTCAGAAAAGATTTCTTTGCGAAGTCTGCAGCAAATGTTTCGCGCAAAGTGGTTCCCTGGTTGCTCACATGCGTACACATACTGGAATCAAACCCTATGTTTGCAACGTATGCAGCCGAGGTTTCACAAAGAGCACTTATCTACAATTGCATTTGCGTACGCATAGCGGAGAAAAACCTTACATTTGTCAGTATTGCAGCCGGGCTTTTGCACGCGCGAATACTTTGGCAAGACACATAACGATGCATACAGGGGAAGCGAAGTATCATTGtcaaatttgtacaaaatcaTTTAGAAGACTGACCTCGCTCAATGAACACAACTACACACACACCGGTCAGAGACCATACGCGtgcaaaatatgtacaaaGAGATATAACAATGCTGGATCACTGTATGCGCATACAAAAAAGTGCAAGGCGCAACAGCTCTCTAATACTGCGTTCGCGGTCTCCGTGGAAAATTCTGTGTCCCAATCAGAGATAAATGAGTCCCAAGTTTTGATTTATTCGCAGAGGAAGTTAGTAGAGGATGCAATTGTGGGACAAGTTACGCCCATGCCACAGTACATGATTGCGAATGTACACAATCAAAAGAATCTGGGATCAAATATTATACCACCGTTTACAGTGGAAGACCCAAATGtttatacaattaattcgAAGCAATTTAAGAATCcctattatacaatttatccaaacatgtaa
Protein Sequence: MEVLKNQQLVDTYEKIYGDECRICLKRAAEICQVFRNGDAIPRKLMAVASVQVEEGDGLPPVICLPCNQSLDASYDFKCRIQNSDEKLRQILKLKSSPSDSVTGASIVTAIIADVISSVISTEKENTEKQDICSTNFCPDNFCFAKDDTPYCLNSDKNFFSYDKESQSQLNSTQQKICLENVNVCKSLLENDHARPVKEEEALPLLDAHVVQNSDTSLKVEGNDASGHQQLLDETSKTDSIQNTIQDDEEKPLISRTARLRCAQCIKSFQTKVALQRDANNVHKRKTKLRYVCYICDKQYSTLAKVKNHIAMCYESHSRKEGVRDKRINHERRKRIASVQDKRLNNIQAKRVKIQKNEDTLKEQRKGLKFMCKVCSKQFTYQKSFITHAKNHSEYKTEELDDSSQCSAKERSIEIVEEEEENEEEEDEEDEDEEDENLPAESLQCTQCGKLFATKRNLKRHLSTHSGLKYTCGTCGKGFSRVDKLKDHEQSKHKIELFDNSDLEDKEDMDNINKEDCLGRRKKDRHDKPHKCAICPKTFAQAQSLENHMERHTRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGIKPYVCNVCSRGFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHNYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQQLSNTAFAVSVENSVSQSEINESQVLIYSQRKLVEDAIVGQVTPMPQYMIANVHNQKNLGSNIIPPFTVEDPNVYTINSKQFKNPYYTIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118159;
90% Identity: iTF_01065732;
80% Identity: -