Nhir006999.1
Basic Information
- Insect
- Nomada hirtipes
- Gene Symbol
- -
- Assembly
- GCA_951802735.1
- Location
- OX637919.1:14634345-14637412[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.2 4.3e+02 2.1 0.1 2 18 260 276 259 276 0.91 2 11 0.0017 0.18 12.8 0.1 1 21 290 310 290 311 0.94 3 11 0.00059 0.06 14.2 3.0 1 23 369 391 369 391 0.97 4 11 1.1e-06 0.00011 22.8 1.8 2 23 443 464 442 464 0.97 5 11 3.1e-05 0.0032 18.2 0.7 1 23 469 492 469 492 0.96 6 11 1.4e-06 0.00015 22.5 0.6 1 23 529 551 529 551 0.98 7 11 8e-07 8.3e-05 23.2 0.9 1 23 561 583 561 583 0.96 8 11 4.6e-06 0.00047 20.9 1.3 1 23 589 611 589 611 0.99 9 11 1.1e-05 0.0012 19.6 0.2 1 23 617 639 617 639 0.98 10 11 0.00031 0.032 15.1 4.3 1 23 645 667 645 667 0.96 11 11 0.00042 0.044 14.7 0.3 1 21 673 693 673 694 0.94
Sequence Information
- Coding Sequence
- ATGGAAGTTTTGAAAAACCAACAGTTAGTTGACACATACGAGAAAATATATGGGGATGAATGTCGGATTTGTTTAAAGAGAGCTGCGGAAATTTGTGAAGTTTTTAGAAATGGGGACGCTATTCCTCGGAAACTTATGGCTGTCGCCTCTGTACAGgTTGAAGAAGGAGACGGTTTACCTCCAGTGATCTGTTTGCCTTGTAATCAACGTTTGGACGAGTCCTATGATTTTAAATGTCGAATAGAAAACTCTGACGAGAAACTTCGACAGATTCTCAAACTAAAGTCTTCTCCAAGCGATTCTGTTACCAGCGCCagtatagttacagcaataaTTGCTGATGTGATATCTAGTGTAATATCTACAGAGAAGGAAAGTACAGAGAAGCAAGATATTTGTTCTACGAACTTTTGCCctgacaatttttgtttcgctaAGGACGATACGCCTTATTGTCTAAATTCGGACAAGAATTTCTTCTCTTACGATAAAGAGCCACAAAGTCAATTAAATAGTACACAGCAAAAGATATGCCtagaaaatgtaaatgtttataaaagcCTGTTAGAGAATGATCATGCGAGACCAATTAAAGAAGAAGCGTTGTCTTTGTTGGACGACCATGTGGTACAAAATTCGGATACCTCGTTAAAGGTAGAAGGAAATGATGCGTCTGGGCATCGGCAGTTGTTAGATGAAACATCGAAAACGGATAGTATACAAAATACTATACAGGACGATGAGGAGAAACCATTAATTTCACGCACAGCTAGATTACGCTGTGCGCAATGTATTAAGTCGTTCCAAACGAAAGTGGCCTTGCAGAGAGATGCCAACAATGTACATAAACGTAAAACGAAATTACGTTATGTTTGTTACATTTGCGATAAACAGTATTCAACTCTTGCAAAGGTGAAGAATCATATAGCAATGTGCTATGAGTCTCATAGCAGGAAGGAAGGTGTTCGAGATAAACGGATCAATCACGAACGGAGGAAAAGAATGGCAAGTGTACAAGAtaaaagaattaataatattcaaGCCAAGAGAGCGAAAATTCAAAAAAACGAAGACACTCTTAAAGAACAGAGAAAAGGTCTGAAATTTATGTGCAAAGTTTGTTCAAAACAATTCACGTATCAAAAATCTTTTATCACTCATGCGAAAAACCATTCGGAGTATAAAACAGAAGAATTGGACGATTCCTCGCAGTGTTCAGCAAAAGAAAGGTCGACCGAAATGgttgaggaagaggaagagaacgagaacgaggaagaggaagatgaAGAGGACGAGGAGGATGAAAATCTTCCTGCTGAAAGTTTACAATGTACCCAATGCGGGAAGTTGTTcgcaacgaaacgaaatcTTAAAAGGCACCTTTCCACACATAGTGGGCTAAAATATACTTGCGGAACGTGTGGTAAAGGATTTTCAAGAGTAGACAAATTAAAGGATCATGAACAATCAAAACACAAGGTCGAATTATTTGATAACTCTGACTTGGACGATAAAGAAGATAtggataatataaataaagaagacTGTCTAGGAAGACGGAAAAAGGATCGGCACGATAAACCGCATAAATGTGCCATCTGTCCTAAAACTTTCGCACAGGCACAGTCCTTAGAAAATCACATGGAACGGCACACGCGTGTAAAAGAAACTCAGAAAAGATTTCTTTGCGAAGTCTGCAGCAAATGTTTTGCACAGAGTGGTTCCCTGGTTGCTCACATGCGTACACATACCGGAGTCAAACCCTATGTTTGCAACGTATGCAGCCGAGGTTTCACAAAGAGCACTTATCTGCAATTGCATTTGCGTACGCATAGCGGAGAAAAACCTTACATTTGTCAGTATTGTAGCCGGGCCTTTGCACGCGCGAATACTTTGGCAAGACACATAACGATGCATACAGGGGAGGCGAAGTATCATTGtcaaatatgtacaaaatcaTTTAGAAGACTGACCTCACTCAATGAACACAACTACACACACACCGGCCAGAGACCATACGCGTGCAAAATATGTAcaaagagatacaacaatgcTGGATCACTTTATGCGCATACAAAAAAGTGCAAGGCGCAACAGCTCTCTAATACTGCTTTCGCGGTCTCCGTGGAAAATTCTGTGTCGCAATCAGAGATAAATGAATCCCAAGTTTTGATTTATTCGCAGAGGAAATTAGTAGAGGATGCAATTGTGGGACAAGTTACGCCGATGCCACAGTACATGATTGCGAATGTACACAATCAAAAGAATCTGGGATCAAATATTATGCCACCGTTTACAGTGGAGGACCCAAATGTTTATACAATTAATTCGAAGCAATTTAAGAATCcctattatacaatttatccaaacatgtaa
- Protein Sequence
- MEVLKNQQLVDTYEKIYGDECRICLKRAAEICEVFRNGDAIPRKLMAVASVQVEEGDGLPPVICLPCNQRLDESYDFKCRIENSDEKLRQILKLKSSPSDSVTSASIVTAIIADVISSVISTEKESTEKQDICSTNFCPDNFCFAKDDTPYCLNSDKNFFSYDKEPQSQLNSTQQKICLENVNVYKSLLENDHARPIKEEALSLLDDHVVQNSDTSLKVEGNDASGHRQLLDETSKTDSIQNTIQDDEEKPLISRTARLRCAQCIKSFQTKVALQRDANNVHKRKTKLRYVCYICDKQYSTLAKVKNHIAMCYESHSRKEGVRDKRINHERRKRMASVQDKRINNIQAKRAKIQKNEDTLKEQRKGLKFMCKVCSKQFTYQKSFITHAKNHSEYKTEELDDSSQCSAKERSTEMVEEEEENENEEEEDEEDEEDENLPAESLQCTQCGKLFATKRNLKRHLSTHSGLKYTCGTCGKGFSRVDKLKDHEQSKHKVELFDNSDLDDKEDMDNINKEDCLGRRKKDRHDKPHKCAICPKTFAQAQSLENHMERHTRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRGFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHNYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQQLSNTAFAVSVENSVSQSEINESQVLIYSQRKLVEDAIVGQVTPMPQYMIANVHNQKNLGSNIMPPFTVEDPNVYTINSKQFKNPYYTIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118159;
- 90% Identity
- iTF_01065732;
- 80% Identity
- -