Nfim019471.1
Basic Information
- Insect
- Noctua fimbriata
- Gene Symbol
- Zfy1
- Assembly
- GCA_905163415.1
- Location
- LR990936.1:18052275-18065791[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.14 13 7.4 1.1 2 23 247 268 246 268 0.96 2 15 3.7 3.4e+02 2.9 0.0 6 23 281 299 281 299 0.94 3 15 0.19 17 7.0 0.1 3 23 309 330 308 330 0.92 4 15 8.1e-08 7.3e-06 27.1 1.0 2 23 353 374 353 374 0.97 5 15 1.6e-05 0.0015 19.8 0.6 1 23 380 403 380 403 0.95 6 15 0.00089 0.081 14.3 0.3 1 23 409 431 409 431 0.97 7 15 2.8e-05 0.0025 19.1 2.7 1 23 437 459 437 459 0.97 8 15 7.7 7e+02 2.0 0.4 1 9 465 473 465 475 0.89 9 15 0.16 15 7.2 3.6 1 23 586 608 586 608 0.95 10 15 0.00041 0.037 15.4 2.0 2 23 615 637 614 637 0.92 11 15 2.2e-06 0.0002 22.5 1.1 1 23 643 665 643 665 0.98 12 15 1.3e-06 0.00011 23.3 4.4 1 23 671 693 671 693 0.98 13 15 0.00012 0.011 17.1 0.2 1 23 699 721 699 721 0.98 14 15 0.002 0.18 13.2 0.3 1 23 727 749 727 749 0.91 15 15 0.0022 0.2 13.1 1.8 1 23 755 778 755 778 0.93
Sequence Information
- Coding Sequence
- atgaataatggaactgaacaaatatttttattaaatgctgtCCCGAGTCAGTCTTCGGCCCCTACGCAGAGGATGAGTGCCATTGTACCACCGCCCAGTAGCCCGCAGGTTAACCTTGATAATGTCGAAGACTTCTCAAATGTGTGTCGGATATGCGCCACCATCACAGAGCTTGTTATGCCCATATTGTCTGGAGAGGGGCTGCAGAACAAACTGGGTAGTAAAATAAAGAAGCACTTACCAATAACGGTACGCGAGAGAGATGAGCTGCCGCTGGTGGTGTGCTACCAGTGCGCCAACACGCTGCTGGCGTGGCACGAGCTGGTCAAGTGTTGCGTGCAGGCTGACCTCGCGCTGCACGCCAAGATCGCCGCCAACAAGCGGaaaAACAATCCACCTAACAACGTTACCGTAAAATCGAGTGCAATTGTTCAAGATGAACCACAGGGCAAGTTGTATTACACGAGTGTCAGAAATGCTCTTACTGAATTTAATCTGGACGAAGATGATACAGATGTAGAATTTGTTTGCCAAAAGTGTGTTGAAAAGCCAGCACTAACCACTACACAAACCCTCGCTGAACATATCCGCCACGATCACTCTCTCGACATACTCAAAAACGGTGTCAAAACATACATCACCAACCATGTAACGTTCGAACAAGTACTAGCTGAAGATTCTGACAGAGAAACACAATCTGTGAGTAAAGAGAAGCCCCAGGTTGTTCTGCCGAGCCTGCACTGTCCGTTCTGCGTGAGTGTGTTCTCTTCGGCCACGCGGTTACTGTACCATCTCAACAGGCACGTTAAAGGGAGCATGGCTGGCGGTGTCGCCGTGTGTTGCGACCTCATCTACAACGACAAGAAACTCTTCGTACAGCACTTGCAAGAGGCACACGTCCACAGGACATCGGAGGAACCAGTGTGCGTCAGCTGTGGCTTCACAACTGATACAATCGACGAGTTGAAGCAGCACTATAAAGATGCACACAGCGATGTGAAAAGCACGAAAGAGAAGAAAGTTGAGAGCCCTAACAACCAAAAGTACATCCCGGCGGTGTGCCCCGAGTGCAACAAGACGTTCTCGAACAAGTACAACATGTTCGCGCACATGCGCAGTCACTCGCGCGCCGCGGTCTACCCGTGCGACAAGTGCACGCGCACCTACAGCAACCAGGGCAACCTCACGCAGCACGAGAAGCTCGCCCACCAGGGAATACTGAAATACATCTGCGGGCATTGCGGGGAGGCCTTCCCGCGCCGGTCGGAGCGCGACACGCACGCGCGCCTACACTCCGGGGAGACGCCCCACCGCTGCCCGCACTGCGGCAAGGCGTACCGCGCCAAGAACACGCTCACCAAACATCTCGAGATACACGCAAACATACGGAAATACGAATGCGAGATCTGCTCCAAAAAGAGCCCCTGCGACTCGCCCGAGGAGCCCCGCAGTGCGCTCTCTGACCGGTCCGAGCTGTCCGATGACGAGCCGCTGGCCACATTCGCTACTAGAAAGCCCACAAATCTCTATACCAACTTCTTCAATGCCCTCGTGAACTTTAGAGATCATTTTGTGAATGATCAACATCATGAGGATTATCCTGACTTCACCGACTCGAGTGTGTCGGACGCTGAGGACAACGATGTGGACAGGTTCGACGACCTGACGCAGTACAACAGGCGGCGAGACCGGCTGGACGAGGAGGCGCGGCTGGAGCTGAGAGAGGTGCAGAACAAGATCGACAACAAGACGTACTACACGTGCAAGATCTGCAACAAGAACCTGAGCTCGGCGCACACGTACCTGTTCCACAAGCGCATCCACACGGGCGAGCGGCCATGCGTGTGCCACGTCTGCGGCAAGCAGTTCCGCGCGCCCAACGGCCTGCAGCGCCACCTCACGGAGACGCACGAACGCCTGCGCCGGTACAACTGCAGCCTCTGCAGCAAGAACTTCGCCAACTCGCAGAACCTCAAACAGCACATACGGATACACACCGGAGAGAAGCCTTTCGTGTGCTCTCACTGCGGGAAGAGGTTTACGCAGAGCGGTTCGCTACACGTGCATCTGAAGACTCACAGTGAACAGTTCCCGTACGAGTGCGCGGAATGCGGGGCTAAGTTCAGGCTGCGGTCGGGGCTGGTGCGGCACCGGCTCAAGCACACGGGCGAGCGGCCGCACGCTTGCGCGACATGCGGCGCCGGCTTCCGGCAGCGACACGAGCTGCGCGCGCACGCCGCAGCGCACAGCGGCGTCGCACCGCACGCCTGCGCCGCCTGCCCGCGCGCCTTCCGCCAGCGCCGCGCGCTGCGGCACCACGTCAAGCGCGTGCACGAGATCGAGCCACCCGACCTGGCCTACACGCACGTCGCACACGTCGCGCCCTACTAG
- Protein Sequence
- MNNGTEQIFLLNAVPSQSSAPTQRMSAIVPPPSSPQVNLDNVEDFSNVCRICATITELVMPILSGEGLQNKLGSKIKKHLPITVRERDELPLVVCYQCANTLLAWHELVKCCVQADLALHAKIAANKRKNNPPNNVTVKSSAIVQDEPQGKLYYTSVRNALTEFNLDEDDTDVEFVCQKCVEKPALTTTQTLAEHIRHDHSLDILKNGVKTYITNHVTFEQVLAEDSDRETQSVSKEKPQVVLPSLHCPFCVSVFSSATRLLYHLNRHVKGSMAGGVAVCCDLIYNDKKLFVQHLQEAHVHRTSEEPVCVSCGFTTDTIDELKQHYKDAHSDVKSTKEKKVESPNNQKYIPAVCPECNKTFSNKYNMFAHMRSHSRAAVYPCDKCTRTYSNQGNLTQHEKLAHQGILKYICGHCGEAFPRRSERDTHARLHSGETPHRCPHCGKAYRAKNTLTKHLEIHANIRKYECEICSKKSPCDSPEEPRSALSDRSELSDDEPLATFATRKPTNLYTNFFNALVNFRDHFVNDQHHEDYPDFTDSSVSDAEDNDVDRFDDLTQYNRRRDRLDEEARLELREVQNKIDNKTYYTCKICNKNLSSAHTYLFHKRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHERLRRYNCSLCSKNFANSQNLKQHIRIHTGEKPFVCSHCGKRFTQSGSLHVHLKTHSEQFPYECAECGAKFRLRSGLVRHRLKHTGERPHACATCGAGFRQRHELRAHAAAHSGVAPHACAACPRAFRQRRALRHHVKRVHEIEPPDLAYTHVAHVAPY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00712186;
- 90% Identity
- iTF_01063977; iTF_01062095; iTF_00928919; iTF_00685698; iTF_01064892; iTF_01533272; iTF_00712186;
- 80% Identity
- -