Lpor019848.1
Basic Information
- Insect
- Lycophotia porphyrea
- Gene Symbol
- Zfy1
- Assembly
- GCA_950005105.1
- Location
- OX465402.1:16684716-16696301[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.054 4.5 8.7 0.2 2 23 245 266 244 266 0.97 2 15 3.1 2.6e+02 3.1 0.1 6 23 279 297 279 297 0.95 3 15 0.25 20 6.6 0.1 3 23 307 328 306 328 0.93 4 15 5.2e-08 4.3e-06 27.6 1.0 2 23 351 372 351 372 0.97 5 15 3e-06 0.00025 22.0 0.8 1 23 378 401 378 401 0.96 6 15 0.0019 0.16 13.2 0.0 1 23 407 429 407 429 0.97 7 15 1.1e-05 0.00095 20.2 2.0 1 23 435 457 435 457 0.97 8 15 7.2 5.9e+02 2.0 0.4 1 9 463 471 463 473 0.89 9 15 0.15 12 7.3 3.6 1 23 584 606 584 606 0.95 10 15 0.00038 0.031 15.4 2.0 2 23 613 635 612 635 0.92 11 15 2.1e-06 0.00017 22.5 1.2 1 23 641 663 641 663 0.98 12 15 1.2e-06 9.8e-05 23.3 4.4 1 23 669 691 669 691 0.98 13 15 0.00011 0.0092 17.1 0.2 1 23 697 719 697 719 0.98 14 15 0.0019 0.16 13.2 0.3 1 23 725 747 725 747 0.91 15 15 0.00019 0.016 16.4 1.8 1 23 753 776 753 776 0.95
Sequence Information
- Coding Sequence
- ATGAATAATGGaactgaacaaatatttttactgaACCCAAATCAGTCTTCGGCCCCTACGCAAAAGATGGGCGCCCTTGCACCGCCGACCAGCAGCACGCAGGTGAACCTCGATAATGTCGAAGACTTTTCAAATGTGTGTCGGATATGTGCCACCATCACAGAGTTTGTTATGCCCATATTGTCTGGAGAGGGGCTACAGAACAACCTGGCACGTAAAATAAGGAAGCACTTACCAATAACGGTACGCGAGAGAGATGAGCTGCCGCAGGTGGTGTGCTACCAGTGCGCGAACACGATACTGGCGTGGCACGAGCTGTTCAAGTGCTGCATGGAGGCCGACATCGCGCTGCACGCTAAGATCGAAGCCAACAAGCGGaaaAACAATCCACCTATCAACGTTACCGTAAAATCGAGTGCAATCGTTCAGGATGAACCACAGGGCAAGTTGTATTACACCAGTGTGAAAAATGCTCTTACTGAATTTAATCTGGACGAAGATGATACAGATGTAGAATTTGTTTGCCAAAAGTGTGTTGAGAAGCCAGCACTGACCACTACACAAACCCTCGCTGAACATATGCGCCACGACCACTCTCTCGATATACTCAACAACGGTGTCAAAACATATATCACGAACCATGTAACGTTCGAACAAGTGCTAGCTGAAGATTCTGACCGAGAAACACAATCTGAGACTAAAGAGAAGCCCCAGGTTGTTTTGCAGAGCCTGCGCTGTCCGTTCTGCGTGGGTGTGTTCTCTTCGGCCACACGGTTACTGTACCATCTCAACAGGCACGTTGAAGTGAGCATGGCTGACGGTGTCATCGTGTGTTGCGACCTCTTCTACAATGACAAGAAACTCTTCGTACAGCACTTGCAAGAGGCACACGTCCACAGGACAGCGGAGGAACCAGCGTGCGTCAGCTGTGGCTTCACGACTGACACAATCGACGAGTTGAAGCAGCACTATAAAGATGCTCACAGTGATGTGAAAAGCACGAAAGAGAAGAAAGTTGAGAGCCCTAACAACCAAAAGTACATCCCGGCGGTGTGCCCCGATTGCAACAAGACGTTCTCCAACAAGTACAACATGTTCGCGCACATGCGCAGTCACTCGCGCGCCGCGGTCTACCCGTGCGACAAGTGCACGCGCACCTACAGCAACCAGGGCAACCTCACGCAGCACCAGAAGCTGGCGCACCAGGGGATACTCAACTACATCTGCGGGGTTTGCGGGGAGGCCTTCCCGCGCCGGTCGGAGCGCGACACGCACGCGCGCCTGCACTCCGGGGAGACGCCCCACCGCTGTCCGCACTGCGGCAAGGCGTACCGCGCCAAGGGCACGCTCACCAAACATCTCGAGATACACGCAAACATACGCAAATACGAGTGCGAGATCTGCTCCAAAAAGAGCCCCTGTGACTCGCCCGAGGAGCCCCGCAGTGCGCTCTCTGACCGGTCGGAGCTGTCCGATGACGAGCCGCTGGCCACATTCGCTACTAGAAAGCCCACAAATCTCTACACCAACTTCTTTAATGCCCTCGTGAACTTTAGAGATCATTTTGTGAATGATCAACATCATGAGGATTATCCTGAATTTACCGACTCGAGTGCGTCGGACGCTGAGGACAACGATGTGGACAGATTCGACGACTTGACGCAATGCAACATGCGGCGAGACCGGCTGGACGACGAGGCGCGGCTGGAGCTGAGAGAGGTGCAGAACAAGATCGACAACAAGACGTACTACACATGCAAGATCTGCAACAAGAACCTGAGCTCGGCACACACATACCTGTTCCACAAGCGCATCCACACGGGCGAGCGGCCGTGCGTGTGCCACGTCTGCGGCAAGCAGTTCCGCGCGCCCAACGGCCTGCAGCGCCACCTCACGGAGACGCACGAGCGCCTGCGCCGGTATAACTGCAGCCTCTGCACCAAAAACTTCGCCAATTCGCAGAACCTTAAACAGCACATTCGGATACACACCGGAGAGAAACCTTTCGTGTGCTCTCACTGCGGGAAGAGGTTCACGCAGAGCGGTTCGCTACACGTGCATCTGAAGACTCACAGTGAACAGTTCCCGTACGAGTGCGCGGAGTGCGGGGCCAAGTTCCGGCTGCGGTCGGGGCTGGTGCGGCACCGGCTCAAGCACACGGGCGAGCGGCCGCACGCGTGCGCGACGTGCGGCGCCGGCTTCCGGCAGCGCCACGAGCTGCGCGCGCACGCCGCAGCGCACAGCGGCGTGGCGCCGCACGCCTGCGCCGTCTGCCCGCGCGCCTTCCGCCAGCGCCGCGCACTGCGCCACCACGTCAAGCGCGTGCACGAGGCCGAGCCGCCCGACCTGGCCTACGCGCACGTCGCGCCCTACTAG
- Protein Sequence
- MNNGTEQIFLLNPNQSSAPTQKMGALAPPTSSTQVNLDNVEDFSNVCRICATITEFVMPILSGEGLQNNLARKIRKHLPITVRERDELPQVVCYQCANTILAWHELFKCCMEADIALHAKIEANKRKNNPPINVTVKSSAIVQDEPQGKLYYTSVKNALTEFNLDEDDTDVEFVCQKCVEKPALTTTQTLAEHMRHDHSLDILNNGVKTYITNHVTFEQVLAEDSDRETQSETKEKPQVVLQSLRCPFCVGVFSSATRLLYHLNRHVEVSMADGVIVCCDLFYNDKKLFVQHLQEAHVHRTAEEPACVSCGFTTDTIDELKQHYKDAHSDVKSTKEKKVESPNNQKYIPAVCPDCNKTFSNKYNMFAHMRSHSRAAVYPCDKCTRTYSNQGNLTQHQKLAHQGILNYICGVCGEAFPRRSERDTHARLHSGETPHRCPHCGKAYRAKGTLTKHLEIHANIRKYECEICSKKSPCDSPEEPRSALSDRSELSDDEPLATFATRKPTNLYTNFFNALVNFRDHFVNDQHHEDYPEFTDSSASDAEDNDVDRFDDLTQCNMRRDRLDDEARLELREVQNKIDNKTYYTCKICNKNLSSAHTYLFHKRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHERLRRYNCSLCTKNFANSQNLKQHIRIHTGEKPFVCSHCGKRFTQSGSLHVHLKTHSEQFPYECAECGAKFRLRSGLVRHRLKHTGERPHACATCGAGFRQRHELRAHAAAHSGVAPHACAVCPRAFRQRRALRHHVKRVHEAEPPDLAYAHVAPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00712186;
- 90% Identity
- iTF_01063061;
- 80% Identity
- -