Nfla012605.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986042.1:71029865-71031817[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.051 1.9e+02 2.8 0.0 23 45 164 186 160 192 0.86 2 10 0.00085 3.2 8.5 0.0 21 46 246 271 239 274 0.90 3 10 0.0084 32 5.3 0.0 21 45 395 419 388 425 0.87 4 10 0.068 2.6e+02 2.4 0.0 22 46 452 476 443 482 0.82 5 10 0.059 2.2e+02 2.6 0.1 21 43 479 501 475 506 0.81 6 10 0.011 42 4.9 0.1 21 44 507 530 501 534 0.87 7 10 0.034 1.3e+02 3.3 0.0 21 46 535 560 530 566 0.83 8 10 0.14 5.5e+02 1.3 0.1 21 43 563 585 558 591 0.84 9 10 0.012 44 4.8 0.1 21 47 591 617 579 624 0.81 10 10 0.43 1.6e+03 -0.2 0.0 21 44 619 642 614 647 0.82
Sequence Information
- Coding Sequence
- ATGGCAAATGTTGATATGGAAAACGTATTGGAAAATGGAAAAGATACTCCTGAACAGAAAAgtaatgaaaatggtttaaataaTCGTTTGTTTATCAGTgagaaaaacattaaattacgAAAAGACTTAAATACAGAAttgtcaataattaaaaaagaaacattagaAGAAAGTGTTACAATGGAACATGACCTAATTAATGATGGAAAACTGGTAGATAGtgttacaataaaaaatgaatcaattaaCGACGAAATATTAGATGAACCAGTTACAATGGAATATGAACGAATTTATCTAAATGAAGAATGGTCCATGATCAAACATGAAAACATTATACTTAAAAAAGAATTCAATGccgaattaataattaaagatgaagtACCCGAAGAAAATGTGAGAGACAAACgttattcatgtaatttttgcaataaaacaTTTAACCATCAAAGCTCTTTAACTGTACATAAACAAATTCACGGTGAAGGcaaaccatttttatgtgatatttgTCAAAAAGCATTTAAACAGAAAAGTAATTTAGTTCTACATAAACAAATTCACAATGGAGGAAAACTGttttcttgtgatgtttgtagtaaaacatttaatcggcaAGGTAATTTAGTTGTACATCAACGAATTCACACTGGTTTCAAACGTTTTTCGTGTAATCTTTGTGGTAAAACATTCACTCAGCAAAGCAGTTTAGATAGCCATTTTCGAATTCATTCTGGAGAAAGACCTTtatcatgtgatgtttgtggtaaaacatttaaacaaCTAACTAATTTAATTAGACATAAAGAATTTCATACAAAAGACTTAAATACAGAATTGTCAATAACTAACAACGAAACATTAGAAAAAACTGTTACAATGGAACATGACctaattaaagatgaaaaactggtagaaagtgttacaataaaaaatgaatcaattaaCGACGAAATATTAGATGAACCAGTTACAATGGAATATGAACGAATTTATCTAAATGAAGAATTGTCCATGATCAAACATGAAAACATtatacttgaaaaagaatttaatgccgaattaataattaaagatgaagtACCAGAAGAAAATGTGGGAGACAAACGTTATTCATGTAATGTTTGCAATAAAACATTTAACCATCAAAGCTCTTTAACTGTACATAAACAAATTCACAGtaaagaaaaaccattttcatgtgatatttgccAGAAGGGATTTAAACAGAAAAGTAATTTAGTTCTACACAAACAAATTCACAATGGAGGAAAACTATTTTCTTGTgatttttgtagtaaaacatTTAAACAGTTAAGTAGTTTAAATAGACATAAAGCAATTCATAccgaagaaaaacaattttcatgtgatgtttgtaataaggcatttaaacagaaaaataatttagttacaCATAAACGGATACACACAGGAgaaaaaccatacacatgtgatgtttgtgatcaaACATTTACCCAACAATCCAGTTTAGAtggacataaacgaattcactcTGGAGAAAcgccattttcatgtgatatttgtaataaagcaTTTAAACAGCTAACCAGTTTAATTCGACATAAAAGAATGCATACAGGAGAAActccattttcatgtgatgtttgtgataaggCATTTAAACAGCGAAGTAATTTAGTTCTACACAAACGAATtcatacgggagaaaaaccatacTCATGCAATGTTTGTGACCAAATATTTACTCAGCAGGGCAGTTTAGATgcacataaacgaatccactctGAAGAAAGgcctttttcatgtgatgtttgtgataaagcaTTTAAAGAACGTTGCAATTTAAAGCAACATAAACGAatacacactggagaaaaaccattttcatgtgatgtttgcgaCACTAAATTTAATAATCCAAGCCATCTAATTagacataaaaaaattcatgcAAAGAAGAAATTATAG
- Protein Sequence
- MANVDMENVLENGKDTPEQKSNENGLNNRLFISEKNIKLRKDLNTELSIIKKETLEESVTMEHDLINDGKLVDSVTIKNESINDEILDEPVTMEYERIYLNEEWSMIKHENIILKKEFNAELIIKDEVPEENVRDKRYSCNFCNKTFNHQSSLTVHKQIHGEGKPFLCDICQKAFKQKSNLVLHKQIHNGGKLFSCDVCSKTFNRQGNLVVHQRIHTGFKRFSCNLCGKTFTQQSSLDSHFRIHSGERPLSCDVCGKTFKQLTNLIRHKEFHTKDLNTELSITNNETLEKTVTMEHDLIKDEKLVESVTIKNESINDEILDEPVTMEYERIYLNEELSMIKHENIILEKEFNAELIIKDEVPEENVGDKRYSCNVCNKTFNHQSSLTVHKQIHSKEKPFSCDICQKGFKQKSNLVLHKQIHNGGKLFSCDFCSKTFKQLSSLNRHKAIHTEEKQFSCDVCNKAFKQKNNLVTHKRIHTGEKPYTCDVCDQTFTQQSSLDGHKRIHSGETPFSCDICNKAFKQLTSLIRHKRMHTGETPFSCDVCDKAFKQRSNLVLHKRIHTGEKPYSCNVCDQIFTQQGSLDAHKRIHSEERPFSCDVCDKAFKERCNLKQHKRIHTGEKPFSCDVCDTKFNNPSHLIRHKKIHAKKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01060900;
- 90% Identity
- iTF_01060900;
- 80% Identity
- iTF_01060900;