Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986042.1:71029865-71031817[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.6e-05 0.0006 20.7 4.5 1 23 138 160 138 160 0.98

2 15 9.4e-06 0.00035 21.4 0.7 1 23 166 188 166 188 0.95

3 15 5.5e-07 2.1e-05 25.3 0.5 1 23 194 216 194 216 0.98

4 15 1.6e-06 5.9e-05 23.8 1.6 1 23 222 244 222 244 0.98

5 15 1.2e-05 0.00043 21.1 0.9 2 23 251 272 250 272 0.93

6 15 3.5e-06 0.00013 22.8 3.2 1 23 371 393 371 393 0.98

7 15 4.8e-06 0.00018 22.3 0.9 1 23 399 421 399 421 0.98

8 15 2.1e-05 0.00077 20.3 2.1 1 23 427 449 427 449 0.97

9 15 2.4e-06 8.9e-05 23.3 1.3 1 23 455 477 455 477 0.98

10 15 1.1e-05 0.00039 21.2 0.6 1 23 483 505 483 505 0.98

11 15 1.7e-06 6.4e-05 23.7 1.4 1 23 511 533 511 533 0.98

12 15 7.7e-07 2.9e-05 24.8 0.7 1 23 539 561 539 561 0.98

13 15 1.7e-05 0.00064 20.6 0.2 1 23 567 589 567 589 0.98

14 15 3.2e-05 0.0012 19.7 3.3 1 23 595 617 595 617 0.98

15 15 3.9e-06 0.00014 22.6 2.1 1 23 623 645 623 645 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.6e-05	0.0006	20.7	4.5	1	23	138	160	138	160	0.98
2	15	9.4e-06	0.00035	21.4	0.7	1	23	166	188	166	188	0.95
3	15	5.5e-07	2.1e-05	25.3	0.5	1	23	194	216	194	216	0.98
4	15	1.6e-06	5.9e-05	23.8	1.6	1	23	222	244	222	244	0.98
5	15	1.2e-05	0.00043	21.1	0.9	2	23	251	272	250	272	0.93
6	15	3.5e-06	0.00013	22.8	3.2	1	23	371	393	371	393	0.98
7	15	4.8e-06	0.00018	22.3	0.9	1	23	399	421	399	421	0.98
8	15	2.1e-05	0.00077	20.3	2.1	1	23	427	449	427	449	0.97
9	15	2.4e-06	8.9e-05	23.3	1.3	1	23	455	477	455	477	0.98
10	15	1.1e-05	0.00039	21.2	0.6	1	23	483	505	483	505	0.98
11	15	1.7e-06	6.4e-05	23.7	1.4	1	23	511	533	511	533	0.98
12	15	7.7e-07	2.9e-05	24.8	0.7	1	23	539	561	539	561	0.98
13	15	1.7e-05	0.00064	20.6	0.2	1	23	567	589	567	589	0.98
14	15	3.2e-05	0.0012	19.7	3.3	1	23	595	617	595	617	0.98
15	15	3.9e-06	0.00014	22.6	2.1	1	23	623	645	623	645	0.98

Sequence Information

Coding Sequence: ATGGCAAATGTTGATATGGAAAACGTATTGGAAAATGGAAAAGATACTCCTGAACAGAAAAgtaatgaaaatggtttaaataaTCGTTTGTTTATCAGTgagaaaaacattaaattacgAAAAGACTTAAATACAGAAttgtcaataattaaaaaagaaacattagaAGAAAGTGTTACAATGGAACATGACCTAATTAATGATGGAAAACTGGTAGATAGtgttacaataaaaaatgaatcaattaaCGACGAAATATTAGATGAACCAGTTACAATGGAATATGAACGAATTTATCTAAATGAAGAATGGTCCATGATCAAACATGAAAACATTATACTTAAAAAAGAATTCAATGccgaattaataattaaagatgaagtACCCGAAGAAAATGTGAGAGACAAACgttattcatgtaatttttgcaataaaacaTTTAACCATCAAAGCTCTTTAACTGTACATAAACAAATTCACGGTGAAGGcaaaccatttttatgtgatatttgTCAAAAAGCATTTAAACAGAAAAGTAATTTAGTTCTACATAAACAAATTCACAATGGAGGAAAACTGttttcttgtgatgtttgtagtaaaacatttaatcggcaAGGTAATTTAGTTGTACATCAACGAATTCACACTGGTTTCAAACGTTTTTCGTGTAATCTTTGTGGTAAAACATTCACTCAGCAAAGCAGTTTAGATAGCCATTTTCGAATTCATTCTGGAGAAAGACCTTtatcatgtgatgtttgtggtaaaacatttaaacaaCTAACTAATTTAATTAGACATAAAGAATTTCATACAAAAGACTTAAATACAGAATTGTCAATAACTAACAACGAAACATTAGAAAAAACTGTTACAATGGAACATGACctaattaaagatgaaaaactggtagaaagtgttacaataaaaaatgaatcaattaaCGACGAAATATTAGATGAACCAGTTACAATGGAATATGAACGAATTTATCTAAATGAAGAATTGTCCATGATCAAACATGAAAACATtatacttgaaaaagaatttaatgccgaattaataattaaagatgaagtACCAGAAGAAAATGTGGGAGACAAACGTTATTCATGTAATGTTTGCAATAAAACATTTAACCATCAAAGCTCTTTAACTGTACATAAACAAATTCACAGtaaagaaaaaccattttcatgtgatatttgccAGAAGGGATTTAAACAGAAAAGTAATTTAGTTCTACACAAACAAATTCACAATGGAGGAAAACTATTTTCTTGTgatttttgtagtaaaacatTTAAACAGTTAAGTAGTTTAAATAGACATAAAGCAATTCATAccgaagaaaaacaattttcatgtgatgtttgtaataaggcatttaaacagaaaaataatttagttacaCATAAACGGATACACACAGGAgaaaaaccatacacatgtgatgtttgtgatcaaACATTTACCCAACAATCCAGTTTAGAtggacataaacgaattcactcTGGAGAAAcgccattttcatgtgatatttgtaataaagcaTTTAAACAGCTAACCAGTTTAATTCGACATAAAAGAATGCATACAGGAGAAActccattttcatgtgatgtttgtgataaggCATTTAAACAGCGAAGTAATTTAGTTCTACACAAACGAATtcatacgggagaaaaaccatacTCATGCAATGTTTGTGACCAAATATTTACTCAGCAGGGCAGTTTAGATgcacataaacgaatccactctGAAGAAAGgcctttttcatgtgatgtttgtgataaagcaTTTAAAGAACGTTGCAATTTAAAGCAACATAAACGAatacacactggagaaaaaccattttcatgtgatgtttgcgaCACTAAATTTAATAATCCAAGCCATCTAATTagacataaaaaaattcatgcAAAGAAGAAATTATAG
Protein Sequence: MANVDMENVLENGKDTPEQKSNENGLNNRLFISEKNIKLRKDLNTELSIIKKETLEESVTMEHDLINDGKLVDSVTIKNESINDEILDEPVTMEYERIYLNEEWSMIKHENIILKKEFNAELIIKDEVPEENVRDKRYSCNFCNKTFNHQSSLTVHKQIHGEGKPFLCDICQKAFKQKSNLVLHKQIHNGGKLFSCDVCSKTFNRQGNLVVHQRIHTGFKRFSCNLCGKTFTQQSSLDSHFRIHSGERPLSCDVCGKTFKQLTNLIRHKEFHTKDLNTELSITNNETLEKTVTMEHDLIKDEKLVESVTIKNESINDEILDEPVTMEYERIYLNEELSMIKHENIILEKEFNAELIIKDEVPEENVGDKRYSCNVCNKTFNHQSSLTVHKQIHSKEKPFSCDICQKGFKQKSNLVLHKQIHNGGKLFSCDFCSKTFKQLSSLNRHKAIHTEEKQFSCDVCNKAFKQKNNLVTHKRIHTGEKPYTCDVCDQTFTQQSSLDGHKRIHSGETPFSCDICNKAFKQLTSLIRHKRMHTGETPFSCDVCDKAFKQRSNLVLHKRIHTGEKPYSCNVCDQIFTQQGSLDAHKRIHSEERPFSCDVCDKAFKERCNLKQHKRIHTGEKPFSCDVCDTKFNNPSHLIRHKKIHAKKKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01061551;
90% Identity: iTF_01061551;
80% Identity: iTF_01061551;