Basic Information

Insect: Nineta flava
Gene Symbol: Prdm9
Assembly: GCA_963920215.1
Location: OY986045.1:63014214-63022283[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.2 4.6e+03 -1.6 0.0 26 37 175 186 171 187 0.89

2 12 7.6e-06 0.029 15.0 0.1 21 45 344 368 338 373 0.90

3 12 0.039 1.5e+02 3.2 0.0 21 45 373 397 369 403 0.87

4 12 0.0029 11 6.8 0.0 20 45 401 426 397 431 0.89

5 12 0.00022 0.82 10.4 0.0 21 45 431 455 426 459 0.90

6 12 0.016 59 4.4 0.1 21 48 460 487 457 489 0.88

7 12 0.00014 0.54 11.0 0.0 20 45 488 513 484 518 0.89

8 12 0.015 58 4.5 0.1 20 48 517 545 513 547 0.88

9 12 0.0067 26 5.6 0.1 21 48 547 574 542 576 0.89

10 12 0.0037 14 6.5 0.0 21 45 576 600 572 605 0.89

11 12 0.03 1.2e+02 3.5 0.0 20 45 604 629 600 634 0.87

12 12 0.0057 21 5.8 0.1 21 48 634 661 630 664 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.2	4.6e+03	-1.6	0.0	26	37	175	186	171	187	0.89
2	12	7.6e-06	0.029	15.0	0.1	21	45	344	368	338	373	0.90
3	12	0.039	1.5e+02	3.2	0.0	21	45	373	397	369	403	0.87
4	12	0.0029	11	6.8	0.0	20	45	401	426	397	431	0.89
5	12	0.00022	0.82	10.4	0.0	21	45	431	455	426	459	0.90
6	12	0.016	59	4.4	0.1	21	48	460	487	457	489	0.88
7	12	0.00014	0.54	11.0	0.0	20	45	488	513	484	518	0.89
8	12	0.015	58	4.5	0.1	20	48	517	545	513	547	0.88
9	12	0.0067	26	5.6	0.1	21	48	547	574	542	576	0.89
10	12	0.0037	14	6.5	0.0	21	45	576	600	572	605	0.89
11	12	0.03	1.2e+02	3.5	0.0	20	45	604	629	600	634	0.87
12	12	0.0057	21	5.8	0.1	21	48	634	661	630	664	0.92

Sequence Information

Coding Sequence: ATGCAATTAGATGTCGAAATATATTTCGATCCTGAGCAATGGAAAATATTGAGTCCCTATGAACGCCAAAGAtattcacaaattttaaaaaattatttagattttgTATCTCTTGgcTTGGATATTCCAAAACCAGATTTTTTAGTAGATTATGAAGTTTTAGAAGCTACGAAAAATAGGAAACAGCGTACAATGAAGAATGTTGTAAAATCTTCGACAATAATAGCATCACATAGTGAACAAGCACATCGTATATATGTTTTGGAAACATTACCTGCAATCAAACAAGGAAATCAATCGACGGAAATTGTCCTGGAATCAACACGAAGTAAACGTTATCCAACAAGACATATCAAGAGAGTTGATTATACAGAAGAAGATATACCCGaagattattatatatATTGCGATCGTTGTGAACGAGAATGGGAAGGTGGTTTTTGTCCATATCATGGTCCACTTTTAAATTGTCTCGATGTTGTAGTACCTAAAGATAAGAAAAATCTAATGCGCGCCATGCAAACCACACCGATTGATTGGTTGTGTATTCGACAATCAGCCATCCCGGATGCTGGTATGGGTGTTTGGTCAATTAAATGTATACCAATTGGAGTTCGCTTTGGTCCCTACGAGGGAGTTGAAACTGTTGATGGAAATAGTGAAGGATATTGTTGGCAGGTTGGTAACATTGTTATATTCATATGTATTCCGATTCGTAAAGATAGGCGTATCACACATTTTGTGGATGGAAAACCGGAAGGTCTATCGAATTGGATGCGTTATGTGAATTGCTCACGTAATATAATTGAACAGAATCTAGTAGCATTCCAATATTTGGGTAAAATATACTATCGtacaataaaacatatatatccaAAAACTGAATTACTTATTTGGTATGGCGATGCGTATGCTGAACGTCTGGGAATTGATCCAAAAGAATATAAAACACCTCTTGACAAGATACAATTATCAGCTACGTTTACTCGTGCTGAGAATTTAAAACAGCATATAAGTGGGATTCATAAAAATGAGCGGCCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACAGAAGCTAGGAATTTAAAAAGGCATATAAGtggtgttcataaaaatgaaCGACCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACGAACTGGGCATTTAAATCAGCATATAAGTGGGGTTCATAAAAATGAGCGGCCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACAAGCTTGGTCTTTAAAAACGCATATAAGTGGGGTTCATAATAATGAGCGACCCTTTAAGTGTCTTATTTGTAAAGCTGCGTTTACACGAACTGGAAATTTAAAAAGGCATATAAGTGGGGTTCATAAAAATGAGCGACCCTTTAATTGTCTTATTTGTAAATCTGCGTTTACACAAGCTGGACATTTAAATCAGCATATAAGTGCGGTTCATAAAAATGAGCGGCCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACAAGCTGGGGATTTAAAAAGGCATATAAGTGGGGTTCATAAAAATGAGCGACCCTTTAAGTGTCTTATTTGTAAATCTGCGTTTACACAAGCTGGGCATTTAAATCAGCATATAAGTGCGGTTCATAATAATGAGCGACCCTTTAAGTGTCTTGTTTGTAAATCTGCGTTTACACAAGCTGGGCATTTAAATCGGCATATAAGTGCGGTTCATAAAAATGAGCGACCTTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACAAGCTGGGTCTTTAAAAATGCATATAAGTGGGGTTCATAAAAATGAGCGACCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACGAGCTGGGTCTTTAAAAATGCATATAAGTGGGGTTCATAAAAAAGAACGTCCAATTAAATGTGTTGAATGTCCAGCAACATTTACAAATAGCggtaatttaaatcaacatatACGTAGTAAGCATAAAAATGAACACTAA
Protein Sequence: MQLDVEIYFDPEQWKILSPYERQRYSQILKNYLDFVSLGLDIPKPDFLVDYEVLEATKNRKQRTMKNVVKSSTIIASHSEQAHRIYVLETLPAIKQGNQSTEIVLESTRSKRYPTRHIKRVDYTEEDIPEDYYIYCDRCEREWEGGFCPYHGPLLNCLDVVVPKDKKNLMRAMQTTPIDWLCIRQSAIPDAGMGVWSIKCIPIGVRFGPYEGVETVDGNSEGYCWQVGNIVIFICIPIRKDRRITHFVDGKPEGLSNWMRYVNCSRNIIEQNLVAFQYLGKIYYRTIKHIYPKTELLIWYGDAYAERLGIDPKEYKTPLDKIQLSATFTRAENLKQHISGIHKNERPFKCLICKATFTEARNLKRHISGVHKNERPFKCLICKATFTRTGHLNQHISGVHKNERPFKCLICKATFTQAWSLKTHISGVHNNERPFKCLICKAAFTRTGNLKRHISGVHKNERPFNCLICKSAFTQAGHLNQHISAVHKNERPFKCLICKATFTQAGDLKRHISGVHKNERPFKCLICKSAFTQAGHLNQHISAVHNNERPFKCLVCKSAFTQAGHLNRHISAVHKNERPFKCLICKATFTQAGSLKMHISGVHKNERPFKCLICKATFTRAGSLKMHISGVHKKERPIKCVECPATFTNSGNLNQHIRSKHKNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01060977;
90% Identity: iTF_01060977;
80% Identity: iTF_01060977;