Nfla022338.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- Prdm9
- Assembly
- GCA_963920215.1
- Location
- OY986045.1:63014214-63022283[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.29 11 7.3 0.1 9 23 327 342 325 342 0.90 2 12 7.9e-05 0.0029 18.5 0.4 1 23 348 371 348 371 0.94 3 12 0.00014 0.0052 17.7 1.1 1 23 377 400 377 400 0.94 4 12 0.00015 0.0055 17.6 0.2 1 23 406 429 406 429 0.94 5 12 3.6e-05 0.0014 19.5 0.3 1 23 435 458 435 458 0.94 6 12 0.0011 0.042 14.8 0.4 1 23 464 487 464 487 0.93 7 12 2.4e-05 0.00091 20.1 0.2 1 23 493 516 493 516 0.94 8 12 0.00031 0.011 16.6 0.5 1 23 522 545 522 545 0.94 9 12 0.0002 0.0073 17.2 0.6 1 23 551 574 551 574 0.94 10 12 0.00017 0.0062 17.5 0.2 1 23 580 603 580 603 0.94 11 12 0.00011 0.0041 18.0 0.2 1 23 609 632 609 632 0.94 12 12 6.8e-06 0.00025 21.8 0.2 2 23 639 661 638 661 0.97
Sequence Information
- Coding Sequence
- ATGCAATTAGATGTCGAAATATATTTCGATCCTGAGCAATGGAAAATATTGAGTCCCTATGAACGCCAAAGAtattcacaaattttaaaaaattatttagattttgTATCTCTTGgcTTGGATATTCCAAAACCAGATTTTTTAGTAGATTATGAAGTTTTAGAAGCTACGAAAAATAGGAAACAGCGTACAATGAAGAATGTTGTAAAATCTTCGACAATAATAGCATCACATAGTGAACAAGCACATCGTATATATGTTTTGGAAACATTACCTGCAATCAAACAAGGAAATCAATCGACGGAAATTGTCCTGGAATCAACACGAAGTAAACGTTATCCAACAAGACATATCAAGAGAGTTGATTATACAGAAGAAGATATACCCGaagattattatatatATTGCGATCGTTGTGAACGAGAATGGGAAGGTGGTTTTTGTCCATATCATGGTCCACTTTTAAATTGTCTCGATGTTGTAGTACCTAAAGATAAGAAAAATCTAATGCGCGCCATGCAAACCACACCGATTGATTGGTTGTGTATTCGACAATCAGCCATCCCGGATGCTGGTATGGGTGTTTGGTCAATTAAATGTATACCAATTGGAGTTCGCTTTGGTCCCTACGAGGGAGTTGAAACTGTTGATGGAAATAGTGAAGGATATTGTTGGCAGGTTGGTAACATTGTTATATTCATATGTATTCCGATTCGTAAAGATAGGCGTATCACACATTTTGTGGATGGAAAACCGGAAGGTCTATCGAATTGGATGCGTTATGTGAATTGCTCACGTAATATAATTGAACAGAATCTAGTAGCATTCCAATATTTGGGTAAAATATACTATCGtacaataaaacatatatatccaAAAACTGAATTACTTATTTGGTATGGCGATGCGTATGCTGAACGTCTGGGAATTGATCCAAAAGAATATAAAACACCTCTTGACAAGATACAATTATCAGCTACGTTTACTCGTGCTGAGAATTTAAAACAGCATATAAGTGGGATTCATAAAAATGAGCGGCCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACAGAAGCTAGGAATTTAAAAAGGCATATAAGtggtgttcataaaaatgaaCGACCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACGAACTGGGCATTTAAATCAGCATATAAGTGGGGTTCATAAAAATGAGCGGCCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACAAGCTTGGTCTTTAAAAACGCATATAAGTGGGGTTCATAATAATGAGCGACCCTTTAAGTGTCTTATTTGTAAAGCTGCGTTTACACGAACTGGAAATTTAAAAAGGCATATAAGTGGGGTTCATAAAAATGAGCGACCCTTTAATTGTCTTATTTGTAAATCTGCGTTTACACAAGCTGGACATTTAAATCAGCATATAAGTGCGGTTCATAAAAATGAGCGGCCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACAAGCTGGGGATTTAAAAAGGCATATAAGTGGGGTTCATAAAAATGAGCGACCCTTTAAGTGTCTTATTTGTAAATCTGCGTTTACACAAGCTGGGCATTTAAATCAGCATATAAGTGCGGTTCATAATAATGAGCGACCCTTTAAGTGTCTTGTTTGTAAATCTGCGTTTACACAAGCTGGGCATTTAAATCGGCATATAAGTGCGGTTCATAAAAATGAGCGACCTTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACAAGCTGGGTCTTTAAAAATGCATATAAGTGGGGTTCATAAAAATGAGCGACCCTTTAAGTGTCTTATTTGTAAAGCTACGTTTACACGAGCTGGGTCTTTAAAAATGCATATAAGTGGGGTTCATAAAAAAGAACGTCCAATTAAATGTGTTGAATGTCCAGCAACATTTACAAATAGCggtaatttaaatcaacatatACGTAGTAAGCATAAAAATGAACACTAA
- Protein Sequence
- MQLDVEIYFDPEQWKILSPYERQRYSQILKNYLDFVSLGLDIPKPDFLVDYEVLEATKNRKQRTMKNVVKSSTIIASHSEQAHRIYVLETLPAIKQGNQSTEIVLESTRSKRYPTRHIKRVDYTEEDIPEDYYIYCDRCEREWEGGFCPYHGPLLNCLDVVVPKDKKNLMRAMQTTPIDWLCIRQSAIPDAGMGVWSIKCIPIGVRFGPYEGVETVDGNSEGYCWQVGNIVIFICIPIRKDRRITHFVDGKPEGLSNWMRYVNCSRNIIEQNLVAFQYLGKIYYRTIKHIYPKTELLIWYGDAYAERLGIDPKEYKTPLDKIQLSATFTRAENLKQHISGIHKNERPFKCLICKATFTEARNLKRHISGVHKNERPFKCLICKATFTRTGHLNQHISGVHKNERPFKCLICKATFTQAWSLKTHISGVHNNERPFKCLICKAAFTRTGNLKRHISGVHKNERPFNCLICKSAFTQAGHLNQHISAVHKNERPFKCLICKATFTQAGDLKRHISGVHKNERPFKCLICKSAFTQAGHLNQHISAVHNNERPFKCLVCKSAFTQAGHLNRHISAVHKNERPFKCLICKATFTQAGSLKMHISGVHKNERPFKCLICKATFTRAGSLKMHISGVHKKERPIKCVECPATFTNSGNLNQHIRSKHKNEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01061550;
- 90% Identity
- iTF_01061550;
- 80% Identity
- iTF_01061550;