Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986041.1:51343354-51344964[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1e-05 0.00038 21.3 1.9 3 23 108 128 106 128 0.95

2 14 1.7e-09 6.5e-08 33.1 1.2 1 23 134 156 134 156 0.99

3 14 3.2e-05 0.0012 19.7 5.1 1 23 162 184 162 184 0.95

4 14 2.5e-06 9.3e-05 23.2 2.3 1 23 190 212 190 212 0.98

5 14 0.0025 0.094 13.8 2.4 1 23 218 240 218 240 0.96

6 14 5.8e-07 2.2e-05 25.2 1.5 1 23 246 268 246 268 0.99

7 14 2.6e-06 9.7e-05 23.1 0.3 1 23 274 296 274 296 0.98

8 14 1.2e-08 4.4e-07 30.5 0.2 1 23 302 324 302 324 0.99

9 14 1e-05 0.00038 21.3 1.8 1 23 330 352 330 352 0.99

10 14 7.4e-06 0.00028 21.7 0.8 1 23 358 380 358 380 0.97

11 14 1.5e-05 0.00056 20.8 1.1 1 23 399 421 399 421 0.97

12 14 6.5e-05 0.0024 18.8 0.3 1 23 441 463 441 463 0.97

13 14 1.7e-08 6.4e-07 30.0 1.4 1 23 469 491 469 491 0.98

14 14 1.4e-05 0.00052 20.9 2.5 1 23 497 519 497 519 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1e-05	0.00038	21.3	1.9	3	23	108	128	106	128	0.95
2	14	1.7e-09	6.5e-08	33.1	1.2	1	23	134	156	134	156	0.99
3	14	3.2e-05	0.0012	19.7	5.1	1	23	162	184	162	184	0.95
4	14	2.5e-06	9.3e-05	23.2	2.3	1	23	190	212	190	212	0.98
5	14	0.0025	0.094	13.8	2.4	1	23	218	240	218	240	0.96
6	14	5.8e-07	2.2e-05	25.2	1.5	1	23	246	268	246	268	0.99
7	14	2.6e-06	9.7e-05	23.1	0.3	1	23	274	296	274	296	0.98
8	14	1.2e-08	4.4e-07	30.5	0.2	1	23	302	324	302	324	0.99
9	14	1e-05	0.00038	21.3	1.8	1	23	330	352	330	352	0.99
10	14	7.4e-06	0.00028	21.7	0.8	1	23	358	380	358	380	0.97
11	14	1.5e-05	0.00056	20.8	1.1	1	23	399	421	399	421	0.97
12	14	6.5e-05	0.0024	18.8	0.3	1	23	441	463	441	463	0.97
13	14	1.7e-08	6.4e-07	30.0	1.4	1	23	469	491	469	491	0.98
14	14	1.4e-05	0.00052	20.9	2.5	1	23	497	519	497	519	0.96

Sequence Information

Coding Sequence: ATGTCAAATACTATAAcagatataaatgaaaataaatatttagaggAAAGTAACAATAGCAATACAGAAATACAACAACAGTTCCCTGTCGAAATAATAATCAAAGAAGAAATTGAAAGTGAAGATGAAAGTGTGGCACAAATATCACAAACACAACGAAAGTGCGGAGTGTGCAATACtttaaatgaaaacaatttaaaaacaaattggaCATGTACCATATGTAACGATCAAAATATGGAAATTAGACACAGAACTCGAAGTGAAACACgaacaaaaattgaaccagaaaaatatgaaattagaGAAAAAccacatttatgtaatatatgtgGAAAATCATTTAAAGAACGTGGTACATTGACCAGGCATGAAAAGGTACATACTGAAGAAAAACCGTATCAATGTAATATATGTGGAAAATTCTTTTCACAGCAAAGTAATTTAAATCGACACGTACGAGTGcacacgggagaaaaaccttttttatgTTGTGTATGTAGCAAATCATTTCCCACACAAGATCATTTAACTCGGCATGAACGTACACATACCGGTGAAAAACCCTATCATTGTAAATATtgtgaaaaatcattttcacaACCGACAAGTTTAAATGTCCACGaaagaattcatactggagaaaagccTTACAAGTGTGGTATATGTGgtaaaacattttctataaaaaataactGTTTAAGTCATGAACGATTACATAATGGTGAAAAACCATATCAATGCAATATATGTTTTAAGACATTTCCCATACAAAGTAATTTAACACGACATGAACGGACCCATAATGGCGAAAAACCATTTCAATGTGTAATGTGTGGTCGAGGTTTTTCACAGCGTGAGGCATTAACAAAACATGAAAGAATTCATACAGGTGAAAAACCTTATGTGTGTACACTATGCGGTAAGTCGTTTACACAACCAGGTAGCTTAACTGTACATATAAGGACTCATACGGGACAAAAACCGTATCAATGTCGTCTCTGTGATAAAGCATTTTCTCAACAAAATAGCTTACATGTACATGAAAGAATACATACTGGAGCAAAACCTTATCAATGTGATTTATGTGATAAAGCGTTTTCACAATCAACAACACTAGCTAAGCATAAAGAAAATCATGATAAACCTCAAATAGATATTGATAATGACCTAATTGAAATTGAAGTAAAACCACATCAATGTGGCGTGTGTGGAAAGTCATTTGCCGGAAAAACATCTTTGATTCGACATGAACGATTTCAcgatttatattcaataaaaaataattttatcgattcaaataaatataaacaccGGCCCTTTCAATGTCAAATTTGTTTCAAAGCATTTTCTGAAAAAGGTTCGTTAGTTCGACATGAAATTATTCATACGAATGAACGACCTTTTCAGTGTAAAATTTGTGGTAAAGGTTTTTCCCAACAAAGTAATTTAAATAGGCATAATATGACGCATACTGGTGAAAAACCGTATCATTGTACAATTTGCCGTAAAGCATTTTCACGTTTAAGTAATTTAAGTCGTCATGAAACTGtacataatagaaaaaaaattatggtgaTATCTCCTCCAATTCAAATTGATTCCGATTAA
Protein Sequence: MSNTITDINENKYLEESNNSNTEIQQQFPVEIIIKEEIESEDESVAQISQTQRKCGVCNTLNENNLKTNWTCTICNDQNMEIRHRTRSETRTKIEPEKYEIREKPHLCNICGKSFKERGTLTRHEKVHTEEKPYQCNICGKFFSQQSNLNRHVRVHTGEKPFLCCVCSKSFPTQDHLTRHERTHTGEKPYHCKYCEKSFSQPTSLNVHERIHTGEKPYKCGICGKTFSIKNNCLSHERLHNGEKPYQCNICFKTFPIQSNLTRHERTHNGEKPFQCVMCGRGFSQREALTKHERIHTGEKPYVCTLCGKSFTQPGSLTVHIRTHTGQKPYQCRLCDKAFSQQNSLHVHERIHTGAKPYQCDLCDKAFSQSTTLAKHKENHDKPQIDIDNDLIEIEVKPHQCGVCGKSFAGKTSLIRHERFHDLYSIKNNFIDSNKYKHRPFQCQICFKAFSEKGSLVRHEIIHTNERPFQCKICGKGFSQQSNLNRHNMTHTGEKPYHCTICRKAFSRLSNLSRHETVHNRKKIMVISPPIQIDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332757;
90% Identity: iTF_01060882;
80% Identity: iTF_01060882;