Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997756.1:33079654-33081371[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.9e-06 0.00015 22.4 2.4 3 23 103 123 101 123 0.95

2 14 3.5e-09 7.6e-08 32.8 1.3 1 23 129 151 129 151 0.99

3 14 3e-05 0.00065 20.4 2.5 2 23 158 179 157 179 0.95

4 14 1.3e-05 0.00029 21.5 2.2 1 23 185 207 185 207 0.98

5 14 0.017 0.38 11.7 3.6 1 23 213 235 213 235 0.96

6 14 3e-06 6.6e-05 23.5 2.4 1 23 241 263 241 263 0.99

7 14 9e-06 0.00019 22.1 0.3 1 23 269 291 269 291 0.98

8 14 1.9e-08 4.1e-07 30.5 0.5 1 23 297 319 297 319 0.99

9 14 1.6e-05 0.00034 21.3 1.8 1 23 325 347 325 347 0.99

10 14 0.00012 0.0026 18.5 1.7 1 23 353 375 353 375 0.97

11 14 1.2e-05 0.00026 21.6 1.7 1 23 394 416 394 416 0.97

12 14 0.00016 0.0034 18.1 0.3 1 23 436 458 436 458 0.97

13 14 6.6e-08 1.4e-06 28.8 1.4 1 23 464 486 464 486 0.98

14 14 0.00023 0.0049 17.6 2.9 1 23 492 514 492 514 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.9e-06	0.00015	22.4	2.4	3	23	103	123	101	123	0.95
2	14	3.5e-09	7.6e-08	32.8	1.3	1	23	129	151	129	151	0.99
3	14	3e-05	0.00065	20.4	2.5	2	23	158	179	157	179	0.95
4	14	1.3e-05	0.00029	21.5	2.2	1	23	185	207	185	207	0.98
5	14	0.017	0.38	11.7	3.6	1	23	213	235	213	235	0.96
6	14	3e-06	6.6e-05	23.5	2.4	1	23	241	263	241	263	0.99
7	14	9e-06	0.00019	22.1	0.3	1	23	269	291	269	291	0.98
8	14	1.9e-08	4.1e-07	30.5	0.5	1	23	297	319	297	319	0.99
9	14	1.6e-05	0.00034	21.3	1.8	1	23	325	347	325	347	0.99
10	14	0.00012	0.0026	18.5	1.7	1	23	353	375	353	375	0.97
11	14	1.2e-05	0.00026	21.6	1.7	1	23	394	416	394	416	0.97
12	14	0.00016	0.0034	18.1	0.3	1	23	436	458	436	458	0.97
13	14	6.6e-08	1.4e-06	28.8	1.4	1	23	464	486	464	486	0.98
14	14	0.00023	0.0049	17.6	2.9	1	23	492	514	492	514	0.97

Sequence Information

Coding Sequence: ATGTCAAATAAAATAATAACAGATATAAATGAAAACAAATATATGGAAGAAAGTAACAGCAGCAACACAGAAATACAACAACAGTTACCTGTCGAAATAATACTCAAAGAAGAAAGTGAAGATGAAAGTGTGACACAAACAGCACAAACACAACGAAAGTGCGGGGTATGCAATACATTTAATGAAAATTGTTTAAAATCAAATTGGAAATGTACCATATGTAACGAACAAAATGTAGAAATTAATCACCGAACTCGAAGTGTAACACAGAAAGAAAAAGATACAATTAAAGAAAAACCACATTTATGTAATATATGTGGCAAATCATTTAAAGAACGAAGTACATTGAACAGGCATGAAAAAGTACATACAGAAGAAAAACCATATCAATGTACCATTTGCGGAAAATTTTTTTCACAACAAAGTAACTTAAATCGACACGTTCGAGTACACACTGGAGAAAAGCCATTTTTATGTAGTGCATGTAGCAAGTCATTTCCCACACAAGATCATTTAACTCGACATGAACGTACACATACAGGTGAAAAACCATATCATTGTAGATATTGTGAAAAATCATTTTCACAACCAACAAGTTTAAATGTCCATGAAAGAATTCATACGGGAATTAAACCTTATAAATGTAGTATATGTGATAAAAGATTTTCTATAAAAAATAATTGTTTAAGTCATGAACGATTACATAATGGTGAAAAACCGTTTCAATGTCATATATGTTTTAAGGCATTTCCTATTCAAAGTAATTTAACGCGTCATGAACGCACCCATAATGGTGAAAAACCGTTCCAGTGTGTAACTTGTGGTCGTGGTTTTTCACAGCGTGAAGCATTAATGAAACATGAAAGGATTCACACCGGTGAAAAACCTTACCGTTGTACTGTATGTGATAAGTCTTTTACTCAACCAGGTAGCTTAACTATACATATCAGAACACATACGGGACAAAAACCGTATCAATGTCGCCTCTGTGATAAAGCATTTTCTCAACAAAACAGTTTACATGTACATGAAAGAATACATACTGGAGACAAACCTTATAAATGTAATCTATGTGATAAATTATTTTCCCAATCAACAACGTTAGCAAAGCATAAAGAAAATCATAATAAACCTGAAATAGTCATCAAACAAGAGATAATTGAAACTGAAGTGAAACCACATCAATGTGGTGTATGTGGAAAATCATTTTCTGGAAAAACATCATTAATCCGACATGAACGATTTCATGATGCATTTTTGATTAAAAATCATTTTATTGATCCAGATAAATACAAACAACGGCCGTTCCAATGTCAAATTTGTTTTAAAGGATTTTCTGAAAAAGGATCTTTAGTTCGGCATGAACTTATTCATACAAACGAAAGACCTTTTCAGTGTAAAATTTGTGGTAAGGGTTTTTCACAACAAAGTAATTTAAGTAGGCACAATATGACACATACTGGTGAAAGACCGTATCAATGTAAAATTTGTTGTAAAGCATTTTCACGTTTAAGTAATTTAAGTCGTCATGAAACTGTGCATAATAGAAAAAAAATTATGATGATACCGCCTCCAGTTTCAATTAATTCCGATTAA
Protein Sequence: MSNKIITDINENKYMEESNSSNTEIQQQLPVEIILKEESEDESVTQTAQTQRKCGVCNTFNENCLKSNWKCTICNEQNVEINHRTRSVTQKEKDTIKEKPHLCNICGKSFKERSTLNRHEKVHTEEKPYQCTICGKFFSQQSNLNRHVRVHTGEKPFLCSACSKSFPTQDHLTRHERTHTGEKPYHCRYCEKSFSQPTSLNVHERIHTGIKPYKCSICDKRFSIKNNCLSHERLHNGEKPFQCHICFKAFPIQSNLTRHERTHNGEKPFQCVTCGRGFSQREALMKHERIHTGEKPYRCTVCDKSFTQPGSLTIHIRTHTGQKPYQCRLCDKAFSQQNSLHVHERIHTGDKPYKCNLCDKLFSQSTTLAKHKENHNKPEIVIKQEIIETEVKPHQCGVCGKSFSGKTSLIRHERFHDAFLIKNHFIDPDKYKQRPFQCQICFKGFSEKGSLVRHELIHTNERPFQCKICGKGFSQQSNLSRHNMTHTGERPYQCKICCKAFSRLSNLSRHETVHNRKKIMMIPPPVSINSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01060882; iTF_01060906;
90% Identity: -
80% Identity: -