Nfla008745.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963920215.1
- Location
- OY986041.1:109081289-109095609[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.4e-111 2e-106 356.3 28.1 1 300 141 473 141 473 0.90 2 3 0.0053 1.4e+02 2.1 3.3 122 171 473 522 472 526 0.90 3 3 0.027 7.2e+02 -0.2 6.9 193 238 503 547 491 548 0.73
Sequence Information
- Coding Sequence
- atggATGGAATTGACATACAACAACCACCATTATCACCATTAGAAGTGAGTTCGTCGAGTATGGATGATGGACGTATATCGAATCGAAACCTAAGTCATAGTGATAGTAGTGAATCGTGTTCAGATGAATGTTTATGGAGTGAAATAGAACCAgtgaaattaaattcaaatcatttaaataatagtaGTGATAGTGATAACGATGAAGAATTCGGGGATGCAAGTGATTTAGTTGTTACCAATGGACATGATAATCGTGGATCACCTCAACAATATATTAAGCAGCAAAGTGCGCAAGTTCGTGATTTTAATCAgattagtaataataatcacaACAGTGAATCGTCAAGTCATCATATGAACAACGAACACCTTGGAAAAGattatttttcagattttttggaTAAATGTAATGATACTgcTGAAGCTCGTTTAGCAGCAAAAAGACAAGCACGTGCAGAAGCTCGTGAAATTCGAATGCGGGAATTGGAACGTCAACAGCGTGAACAAGAGGAGAATGCGGATCGTGTTTATGATATGTATACAGatccAGTAACTAGAAATGCAGCAACTGTTCGTTTAGCTGGATCAACTAGGAATACAATGTTATCAAATAGTAGTTATATGTCAAGTCGGCGAAGTTCAGAAGATTCCTTAGAGGATAGTGGGACTTTAAGAGATGTTCGTcATGAACTTCGAGAAATAGAGGAGAAATTTCGCAAAGCAATGATTGCAAATGCACAATTAGATAATGATAAAGCATCATATACATATCAAATAGAATTATTGAAAGATAAATTAGAAGATTTAGAACAAGATCATATACAATTACAACGTGAACATAGAGATAAATGTCGGGAACATGAACAATTAAAACGGGCGGCGGCAAAATTAAAAGAAgacttattttttgttaaaactcAACTAGAAGAGCGTGACATATTAATTGCTGAGAAAGGTCTAGTTATTGTTGTATGCGAGGAGAATGGTCTAAATGGTTACGATGACCCCGATCATGACACAAATAATGGTGGAGGTGGGGGTAATGGTGATGCATCTGAGAATTCAAATATTATGAAACCGAAAAAAGCATTAGTTAGTATAGAAAATGCAGAATTATTAGAATCAGCTGGTGAAGGTAGTTTAGATGTACGATTAAAACGCTTTATCGAAGATAAAAAAGAATTAGAGGATCAAGTACGATCGTTACGTATTGAATTAGACGAAGAACGAAATAAATCACGAAGGCGACGGCCGAGTAGTAATACATCGTCAATAATTGGTAATACAATCACGCACAATGGACCCGACTCAGAATATTTTAGTGATTTAGATGTAATTGATGTACAaagagaAGCGAATAAACAATTAGcagattataaatttaaattacaaaaagctGAGCAAGATATTGCAACTTTACAAGGAACTGTAGCTCGTTTAGAGACACAAGTTGTACGATATCGTGCTGAAGCGGAAGCATCAGAACGAGCTGAAGATgaattaaaaacagaaaaaagaaaattacaaaGAGAGGCTCGCGAATCACAAAATCGAGTCGAAGAATTAGAGACTGCCAACAGCCATTTACAAAAACGTTTAGATAAATTGAAGAATGccaaatcaacattattaaaAGAACTTTGA
- Protein Sequence
- MDGIDIQQPPLSPLEVSSSSMDDGRISNRNLSHSDSSESCSDECLWSEIEPVKLNSNHLNNSSDSDNDEEFGDASDLVVTNGHDNRGSPQQYIKQQSAQVRDFNQISNNNHNSESSSHHMNNEHLGKDYFSDFLDKCNDTAEARLAAKRQARAEAREIRMRELERQQREQEENADRVYDMYTDPVTRNAATVRLAGSTRNTMLSNSSYMSSRRSSEDSLEDSGTLRDVRHELREIEEKFRKAMIANAQLDNDKASYTYQIELLKDKLEDLEQDHIQLQREHRDKCREHEQLKRAAAKLKEDLFFVKTQLEERDILIAEKGLVIVVCEENGLNGYDDPDHDTNNGGGGGNGDASENSNIMKPKKALVSIENAELLESAGEGSLDVRLKRFIEDKKELEDQVRSLRIELDEERNKSRRRRPSSNTSSIIGNTITHNGPDSEYFSDLDVIDVQREANKQLADYKFKLQKAEQDIATLQGTVARLETQVVRYRAEAEASERAEDELKTEKRKLQREARESQNRVEELETANSHLQKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332359;
- 90% Identity
- -
- 80% Identity
- -