Ccar004701.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:5289125-5295624[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.6e-112 6.2e-108 361.0 29.1 1 300 134 463 134 463 0.90 2 3 0.0025 59 3.2 3.0 122 172 463 513 461 519 0.90 3 3 0.031 7.4e+02 -0.4 7.2 193 238 493 537 481 538 0.73
Sequence Information
- Coding Sequence
- ATGGATGCGATTGACATACAACCATCATTATCACCATTAGAAATGAGTTCGAGTAGTGTTGATGAGATATCGAATCGAAATAGTGATAGTGTTTCATGTTCAGATGAATGTTTATGGAGTGAAATAGAACCAGTGAAATTAAATAATGATCAAATTTATAATAATAGTAATAGTGATAGTGATGATGAATTTGGAGATGCAAAAAATGATTTAAGTGATTTAGTTGTTAATGGACACGATTCAAAAAAGTGTGATAATAATGGATCCTCGTTATATATTGAGGCGAAAAACGATCATGTTGGTGAATTTAATCAGAAGAATAAACATAGTAATGATTCATCGAATCATATGAATGGAAAAGATTATTTTTCAGATTTTTTGGATAAATGTAATGATACTGCTGAAGCTCGGTTAGCAGCAAAAAGACAAGCACGCGCTGAAGCTCGTGAAATCCGAATGCGTGAATTAGAACGTCAGCAACGTGAACTAGAGGAGAATGCAGATCGTGTTTATGATATGTATACAGATCCCGTAACCAGAACTGCAGCAACTGTTCGTTTAACTGGATCAACTAGGAATACAATGTTATCAAATAATAGTTATATGTCAAGTCGGAGGAGTTCAGAAGATTCCTTAGAAGACAGTGGAACTTTAAGGGATGTTCGTCATGAACTTCGTGAAATAGAAGAGAAATTTCGGAAAGCAATGATTGCAAATGCACAATTAGATAATGATAAAGCATCATATACATATCAAATAGAATTATTGAAAGATAAATTAGAAGATCTAGAACAAGATCATATACAATTACAACGTGAACATAGAGATAAATGTCGGGAGCATGAACAATTAAAACGAGCGGCGGCCAAATTAAAAGAAGACTTAGTATTTGTTAAAACTCAATTAGAGGAACGTGACGTGTTAATTGCTGAGAAAGGTTTAGTTATTGTTGTGTGCGAAGAGAATGGTTTAAATGGTTACGATGATCCCGATCATAATACAAGTAATGGTGGCAATGGTGATGCTTCAGAGAATGCAAATGTTATGAAACCGAAGAAAGCATTAGTTAGTATAGAAAATGCAGAATTATTAGAATCAGCAGGTGAAGGTAGTCTAGATGTGCGATTAAAACGTTTTATCGAAGAGAAAAAAGAATTAGAGGATCAAGTACGATCGTTACGTATTGAATTAGACGAAGAACGAAATAAATCACGAAGACGACGACCTAGTAGTAACACATCATCAACAATTGGTAGTACAATCACGCACAATGGACCCGACTCTGAATATTTTAGTGATTTAGATGTAATTGATGTACAAAGAGAAGCAAATAAACAATTAGCAGATTATAAATTTAAGTTACAAAAAGCTGAGCAAGATATTGCAACTTTACAAGGAACTGTTGCTCGTTTAGAAACACAAGTTGTAAGGTATCGTGCTGAAGCTGAAGCGTCAGAACGAGCTGAAGATGAATTAAAAACAGAAAAAAGAAAATTACAGAGAGAGGCTCGCGAATCACAAAATCGAGTCGAAGAATTAGAGACTGCCAACAGCCATTTACAAAAACGTTTAGATAAATTGAAGAATGCCAAATCAACATTATTAAAAGAACTTTGA
- Protein Sequence
- MDAIDIQPSLSPLEMSSSSVDEISNRNSDSVSCSDECLWSEIEPVKLNNDQIYNNSNSDSDDEFGDAKNDLSDLVVNGHDSKKCDNNGSSLYIEAKNDHVGEFNQKNKHSNDSSNHMNGKDYFSDFLDKCNDTAEARLAAKRQARAEAREIRMRELERQQRELEENADRVYDMYTDPVTRTAATVRLTGSTRNTMLSNNSYMSSRRSSEDSLEDSGTLRDVRHELREIEEKFRKAMIANAQLDNDKASYTYQIELLKDKLEDLEQDHIQLQREHRDKCREHEQLKRAAAKLKEDLVFVKTQLEERDVLIAEKGLVIVVCEENGLNGYDDPDHNTSNGGNGDASENANVMKPKKALVSIENAELLESAGEGSLDVRLKRFIEEKKELEDQVRSLRIELDEERNKSRRRRPSSNTSSTIGSTITHNGPDSEYFSDLDVIDVQREANKQLADYKFKLQKAEQDIATLQGTVARLETQVVRYRAEAEASERAEDELKTEKRKLQREARESQNRVEELETANSHLQKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01060634;
- 90% Identity
- -
- 80% Identity
- -