Nvir014787.1
Basic Information
- Insect
- Netelia virgata
- Gene Symbol
- -
- Assembly
- GCA_951802705.1
- Location
- OX637867.1:9218004-9221933[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.11 8.8 7.2 0.2 2 23 230 252 229 252 0.91 2 18 0.16 14 6.6 0.5 1 23 264 287 264 287 0.95 3 18 0.014 1.2 9.9 4.9 1 23 300 323 300 323 0.94 4 18 0.0011 0.093 13.4 4.8 1 23 329 351 329 352 0.93 5 18 0.023 2 9.2 0.4 2 23 358 380 357 380 0.95 6 18 0.00092 0.077 13.7 1.2 1 23 385 408 385 408 0.98 7 18 7.8e-07 6.5e-05 23.3 0.5 2 23 415 436 414 436 0.96 8 18 6.9e-07 5.8e-05 23.5 0.3 1 23 442 464 442 464 0.96 9 18 0.00015 0.012 16.2 1.0 1 23 470 492 470 492 0.97 10 18 0.00012 0.01 16.4 5.6 3 23 612 632 611 632 0.97 11 18 0.00072 0.061 14.0 0.9 1 23 634 657 634 657 0.95 12 18 0.0033 0.28 11.9 2.4 1 23 662 685 662 685 0.96 13 18 5.1e-05 0.0043 17.6 2.1 1 23 691 714 691 714 0.96 14 18 0.0014 0.11 13.1 2.0 2 23 721 743 720 743 0.95 15 18 0.0023 0.19 12.4 0.3 1 23 748 770 748 770 0.96 16 18 0.00049 0.041 14.5 0.3 3 23 778 797 777 797 0.98 17 18 7.2e-06 0.0006 20.3 0.1 1 23 803 825 803 825 0.97 18 18 0.0057 0.48 11.2 0.7 1 23 831 853 831 853 0.97
Sequence Information
- Coding Sequence
- ATGAAGAAATGGCAGATATTGGAATTCGACGGTAAGGCATACTACGCATTCGTGCCGGAGAACGATGATCCTTTCGACACGGGTTGTACAccggaaattgaaaaaagaagcgCTCGGTCTCTCAAGGAAGAAATAATCACGGGAGATTATATGTACGAGGAGGATTCACCGGAGAACGACGCAAGTTTTTGCAAATACGACGAGTCGAACGAAGAGGACGAGCAGCAACCTGGATTGGACGAGACGAAGCCATCGTTATTGAACGCTTCGAGAGCCGCGAATCGAACAAAATCTCTCGGTAATTTATATCAGGTAAAGATCGAAGCAAGCACGGTAACGTTGGAGAGACTCGCCGAAGGAGCCGAGACCGATGGAGAGATGCAGATGTCGGAAAGGATGAAACAAGAGCCCTCGATCGAGCTATCGGATTACGAGATGAACGAGACGCTCGACGAAGATCTCGAGGAGGAGGATTTTGTCGAggattcgatcgtcgataattctATGGAGGATTTAATCGTCGAGGAACGTCAAGAGGAGGATCaggaggagaacgaggaagaggaagcGGACGAgcaggaggaaggagaggaggaAGCGACTGAAGGAAAACCAAGACAATATCGACTCGAAGAAGCTTCGGAAAATTTTACCtcgacgatgacgaaaatGACCGGAGGACCTCTCAAGTGTAAAGCGTGCTCGGAAACTTTTGGCTCGGAGATGGCTTTTAAAAAGCACGTAGCTTGGACCCACAAGAAGAAAGTTTGCATCCAAGAAGCTGGTGCTTACATATGCTCGGTCTGTGATTACAGAACGTTGAAGAAGTCTCTGTTCGCGGCTCATCTCGAGAGAAAACACGAGACATGGACGAGAAAACGGCAGAGCAGTCTCGTATTTCCCTGCGAAACTTGCGGTTTCATCTGTCGTTCCAAACACTCGTTGCAGTCACATTTCATCAGGAAGCACACCGACAGATTCGAACATGATTGTAATTTTTGCGCAAAGAAATTCAAGGTCAAGGGTGATCTCACGAATCACATAAGATTTCATCACAAGGAGAAACCGATAAGCTGCGACGTTTGCGGTAAATTGTGCCAGAACACGGGTTCCCTTTACGTTCATCAAAAGTGGGCTCATTACAAGCCAAAGTACGAGTGTCACATATGCAAACGTCGTATGGTAACGCAGGAAAATCTCGATCAGCATCTCATCACCCAACACGAAAgacgtgaaaaaattgtttgcgcaCAGTGCGGTAAGACTTTCACGAAGAAAGACTCGTTCAGACGACACATGGCCGTACACTCGGGATGCAAACCTCATCCTTGTCCGATATGCACCAAACCATTCGCTCGTCAATCTCAGCTTAGACAACACGTTCTCATACACACCGGGCAGCGTCCCTTTATTTGCGACATATGTGGCAAAGGTTTCACCCAAAAGCCAGGACTGATCTGTCACAGAAAAACCCACCCAGGACCTCACGCACCTTTGCCAGTTATGCCTATAGCCGACCTCGTCAGAGATTTTATCGCTCAGAACGAGGAGAGTCAGAGTCATGATCTTGATTTGGAAAATCTGCAACAAGATCCTCTGATCATCTCGGAAAATAAAACCGCGTCACGACGTCTCCGATCTATTACGACTTCTGGATACAAGAATCTGAAAccgcaaagaagaaaaaagtggccAAACGACAAGAAGGACGTCTGTcatcgagaaagaagaaactcgCTCGagaattcgacgaaacaatcTTCCCAAGTTGACACGATCGTATCGTCGAGAAGATCGATCTCGAAAGGATCCGCAGCTCGAATTAGCGTCGACTGTCATCATTGCGGGAGAAAGTTTCAAAAGAAGAGCAATCTGATCGAGCACCTCAAGCAACACAGGCACAAATGTCTCGAGTGCCCGAAAACTTTCAGTCTCACTCGTTATCTCGAAGCTCACGTCGACAAGGCTCATCGTCTTCACGTACACGAGTGTAGCTTGTGCGATTACAAGAGCAATAACAAGGGTACCCTGAAGAATCATTACATAAGATTACACACGAGTAATTACGAGTATTCGTGCGAGATCTGTGGCAAACAGTTCAAGATAAAGAAAGCACTGAATCATCACGTGAAACAAAATCACAGTGATTTACCGCCGATAGTGTGCGACGTTTGCGGTCACTTCAGCAAGAATCTTCATGCTCTCAAGGCCCACATGAAGTATCGTCACTACAAGCCCGAATTTAtctgcaaaatatgcagacgTGGTATGACAACCAGAGAGAATCTCGAGCAGCACATAACTTGGCACGAAACCCGTGAGAAAGTGTTGTGTCCAACTTGCGGCAAGAGATTTCGTGGTCGAGATCTTGACGCCCACATGAGAGTTCACACGGGTGTAAAGCCTTTTCCGTGTCCAGTTTGCGGCAAAACTTTTCGACGTCAAACAGCTCAGGAACAACACGTTCTCATTCACACTGGAAAAAGGCCATACGTGTGTGATATCTGCAGTCAAGCCTTCGCCCAAAAGCCAGGACTCATCTGTCACCGAAAGAGACATCCGGGACCGTTGCCACCGTTGCCCATAGtttctattaaaaatatcgttaccGAATTCACTCGCGAAtacacgacgagaaaaattgaggTCTGA
- Protein Sequence
- MKKWQILEFDGKAYYAFVPENDDPFDTGCTPEIEKRSARSLKEEIITGDYMYEEDSPENDASFCKYDESNEEDEQQPGLDETKPSLLNASRAANRTKSLGNLYQVKIEASTVTLERLAEGAETDGEMQMSERMKQEPSIELSDYEMNETLDEDLEEEDFVEDSIVDNSMEDLIVEERQEEDQEENEEEEADEQEEGEEEATEGKPRQYRLEEASENFTSTMTKMTGGPLKCKACSETFGSEMAFKKHVAWTHKKKVCIQEAGAYICSVCDYRTLKKSLFAAHLERKHETWTRKRQSSLVFPCETCGFICRSKHSLQSHFIRKHTDRFEHDCNFCAKKFKVKGDLTNHIRFHHKEKPISCDVCGKLCQNTGSLYVHQKWAHYKPKYECHICKRRMVTQENLDQHLITQHERREKIVCAQCGKTFTKKDSFRRHMAVHSGCKPHPCPICTKPFARQSQLRQHVLIHTGQRPFICDICGKGFTQKPGLICHRKTHPGPHAPLPVMPIADLVRDFIAQNEESQSHDLDLENLQQDPLIISENKTASRRLRSITTSGYKNLKPQRRKKWPNDKKDVCHRERRNSLENSTKQSSQVDTIVSSRRSISKGSAARISVDCHHCGRKFQKKSNLIEHLKQHRHKCLECPKTFSLTRYLEAHVDKAHRLHVHECSLCDYKSNNKGTLKNHYIRLHTSNYEYSCEICGKQFKIKKALNHHVKQNHSDLPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFICKICRRGMTTRENLEQHITWHETREKVLCPTCGKRFRGRDLDAHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYVCDICSQAFAQKPGLICHRKRHPGPLPPLPIVSIKNIVTEFTREYTTRKIEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01057078; iTF_01056249;
- 90% Identity
- iTF_01057078;
- 80% Identity
- -