Ntho002190.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- -
- Assembly
- GCA_964017225.1
- Location
- OZ024920.1:9038429-9042321[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.11 8.4 7.2 0.2 2 23 227 249 226 249 0.91 2 18 0.17 13 6.6 0.5 1 23 261 284 261 284 0.95 3 18 0.015 1.1 9.9 4.9 1 23 297 320 297 320 0.94 4 18 0.0012 0.088 13.4 4.8 1 23 326 348 326 349 0.93 5 18 0.025 1.9 9.2 0.4 2 23 355 377 354 377 0.95 6 18 0.00098 0.074 13.7 1.2 1 23 382 405 382 405 0.98 7 18 8.3e-07 6.2e-05 23.3 0.5 2 23 412 433 411 433 0.96 8 18 7.3e-07 5.5e-05 23.5 0.3 1 23 439 461 439 461 0.96 9 18 0.00016 0.012 16.2 1.0 1 23 467 489 467 489 0.97 10 18 0.00013 0.0099 16.4 5.6 3 23 609 629 608 629 0.97 11 18 0.00077 0.058 14.0 0.9 1 23 631 654 631 654 0.95 12 18 0.0018 0.14 12.8 2.1 1 23 659 682 659 682 0.96 13 18 5.5e-05 0.0041 17.6 2.1 1 23 688 711 688 711 0.96 14 18 0.0015 0.11 13.1 2.0 2 23 718 740 717 740 0.95 15 18 0.0024 0.18 12.4 0.3 1 23 745 767 745 767 0.96 16 18 0.00085 0.064 13.9 0.5 3 23 775 794 774 794 0.98 17 18 7.6e-06 0.00058 20.3 0.1 1 23 800 822 800 822 0.97 18 18 0.006 0.46 11.2 0.7 1 23 828 850 828 850 0.97
Sequence Information
- Coding Sequence
- ATGAAGAAATGGCAGATATTGGAATTCGACGGTAAAGCATACTACGCATTCGTACCGGAGAACGATGATCCTTTCGACACGGGTTGCACAACCGAAATGGAGAAAAGAAGCGATCCGTGTCTCAAGGAAGAGATAATGACGGAAGATTATATCTACGAGGACGATTTACCGGAAAACGACGCAAGTTTTTCCAAATACGACGAGTCGAACGACGAGGAGGAGCAGTCTGGATTGGACGAGGCGAAGCCTTCATTATCAACCGCTTCGGAAGCCACGAATCGAACAAAATCTCTCGGTAATTTATATCAGGTTAAGATCGAAGCAAGCACAGTGACGTTGGAGAGGCTTGCCGAAGGAGTCGAAACCGATGGAGAGATGCAGTTGTCGGAAACGATGAAACAAGAACCCTCGACCGAGCTATCCGATTATGAGATGAACGAGACGCTCGAAGAGGATCTCGAGGAGGAGGATTTTATCGAGGATTCGATCGTCGATAATTCTATGGAGGATTTAATCGTCGAGGAACGccaagaggaagaggagaacgaggaagaagaagcggATGAGCTGGAAGAAGTAGAGGAGgaaataattgaagaaaaaacaagacaATATCGTCTTGAAGGACCTTCGAAAAATTTTACCGCGACGATGACGAAAATGACCGGAGGACCTCTCAAGTGCAAAGCATGCTCAGAAACATTTGGCTCGGAAATGGCTTTTAAAAAGCACGTAGCCTGGACCCACAAGAAGAAAGTTTGCATCCAAGAGGCCGGTGCTTACATATGCTCGGTCTGCGATTACAGAACGTTGAAGAAGTCCCTGTTCGCGGCTCATCTCGAGAGAAAACACGAGACATGGACGAGAAAGCGACAGAGCAGTCTCGTCTTTCCCTGCGAAACTTGCGGTTTCATCTGTCGCTCCAAACACTCGTTGCAGTCACATTTCATCAGAAAGCACACCGACAGATTCGAGCACGATTGCAATTTTTGCGCAAAGAAATTCAAAGTCAAGGGTGATTTGACGAATCACATAAGATTTCATCACAAGGAGAAACCTATAAGCTGCGACGTTTGCGGAAAATTGTGCCAGAACACGGGTTCCCTTTACGTTCATCAAAAGTGGGCCCACTATAAGCCAAAGTACGAGTGTCACATATGCAAGCGTCGTATGGTAACGCAAGAAAATCTCGATCAGCATCTCATCACGCAACACGAGCGACGTGAAAAAATCGTTTGCGCACAGTGCGGCAAGACTTTCACGAAGAAGGACTCGTTCAGACGACACATGGCTGTACACTCGGGATGCAAACCTCATCCTTGTCCGATATGCACGAAACCATTCGCTCGTCAGTCTCAGCTTAGACAGCACGTTCTCATACACACCGGACAGCGTCCGTTTATTTGCGACATATGCGGCAAAGGTTTCACCCAAAAGCCAGGACTGATCTGTCACAGAAAAACCCATCCAGGACCTCACGCACCTTTGCCAGTCATGCCCATAGCCGACCTCGTCAGAGATTTTATCGCTCAGAACGAGGAGAGTCAGAGTCATGATCTCGATTTGGAaaATCTGCAACGAGATCCTTTGACCAtcttggaaaataaaattgcgtCACGACGTCTCCGATCTATCACGACTTCCGGATACAAGAGTCTAAAACCACAAAGGAGAAAAAAGTGGACTATCGACAAGAAGGACGTTTGCCATCTAGAAAGAAGAAGCTCGCTCGAGAATTCGACGAAAGAATCTTCCCAAGTTGACACGATCGTATCGTCGAGAAGATCGATCTCGGCAGGATCCGCAGCTCGAATTAGCGTTGATTGTCATCATTGCGGGAGAAAGTTTCAGAAGAAGAGCAATCTGATCGAGCACCTCAAGCAGCACAGACACAAATGTCTCGAGTGTCCGAAAACTTTCAGTCTCACTCGTTATCTCGAAGCTCACGTCGACAAGGCGCATCGTCTTCACCTACACGAGTGCAGCGTGTGCGATTACAAAAGCAACAACAAGGGTACCCTGAAGAATCATTACATAAGATTACACACGAGCAATTACGAGTATTCGTGCGAAATCTGTGGCAAACAGTTCAAGATAAAGAAAGCACTGAATCATCACGTGAAACAAAATCATAGTGATTTGCCACCGATAGTGTGCGACGTTTGCGGTCACTTCAGCAAGAATCTTCATGCTCTCAAGGCCCACATGAAATATCGTCATTACAAGCCCGAATTTATCTGCAAAATATGCAGACGTGGTATGACAACCAGAGAGAATCTCGAGCAGCACATAACTTGGCACGAAACCCGTGAGAAAGTGTTGTGTCCAACTTGCGGCAAGAGATTTCGTGGTCGGGATCTTGATTCCCACATGAGAGTTCACACGGGTGTAAAGCCTTTTCCCTGTCCAGTTTGCGGCAAAACTTTTCGACGTCAGACAGCCCAGGAACAGCACGTTCTCATTCACACTGGGAAACGACCGTACGTTTGTGATATCTGCAGTCAAGCCTTCGCTCAAAAGCCAGGACTGATCTGTCACCGAAAGAGACATCCAGGACCGTTGCCACCGTTGCCTATAGTTTCTATTAAAAAGATCGTCACCGAATTCACTCGCGAATACACGACGAGAAAAATACAGGACTGA
- Protein Sequence
- MKKWQILEFDGKAYYAFVPENDDPFDTGCTTEMEKRSDPCLKEEIMTEDYIYEDDLPENDASFSKYDESNDEEEQSGLDEAKPSLSTASEATNRTKSLGNLYQVKIEASTVTLERLAEGVETDGEMQLSETMKQEPSTELSDYEMNETLEEDLEEEDFIEDSIVDNSMEDLIVEERQEEEENEEEEADELEEVEEEIIEEKTRQYRLEGPSKNFTATMTKMTGGPLKCKACSETFGSEMAFKKHVAWTHKKKVCIQEAGAYICSVCDYRTLKKSLFAAHLERKHETWTRKRQSSLVFPCETCGFICRSKHSLQSHFIRKHTDRFEHDCNFCAKKFKVKGDLTNHIRFHHKEKPISCDVCGKLCQNTGSLYVHQKWAHYKPKYECHICKRRMVTQENLDQHLITQHERREKIVCAQCGKTFTKKDSFRRHMAVHSGCKPHPCPICTKPFARQSQLRQHVLIHTGQRPFICDICGKGFTQKPGLICHRKTHPGPHAPLPVMPIADLVRDFIAQNEESQSHDLDLENLQRDPLTILENKIASRRLRSITTSGYKSLKPQRRKKWTIDKKDVCHLERRSSLENSTKESSQVDTIVSSRRSISAGSAARISVDCHHCGRKFQKKSNLIEHLKQHRHKCLECPKTFSLTRYLEAHVDKAHRLHLHECSVCDYKSNNKGTLKNHYIRLHTSNYEYSCEICGKQFKIKKALNHHVKQNHSDLPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFICKICRRGMTTRENLEQHITWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYVCDICSQAFAQKPGLICHRKRHPGPLPPLPIVSIKKIVTEFTREYTTRKIQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01057822;
- 90% Identity
- iTF_01056249; iTF_01057822;
- 80% Identity
- -