Basic Information

Insect: Netelia virgata
Gene Symbol: -
Assembly: GCA_951802705.1
Location: OX637867.1:19552974-19557691[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.015 1.3 9.8 2.0 1 23 353 375 353 375 0.95

2 18 0.03 2.5 8.9 0.6 2 23 424 445 423 445 0.95

3 18 0.00027 0.023 15.3 1.5 1 23 547 569 547 569 0.96

4 18 0.00052 0.044 14.4 3.8 2 23 665 686 664 686 0.97

5 18 0.00012 0.01 16.4 1.7 2 23 692 713 691 714 0.94

6 18 0.00055 0.046 14.4 0.4 1 20 721 740 721 745 0.92

7 18 0.00011 0.0094 16.5 2.3 1 23 842 864 842 864 0.97

8 18 5.6e-05 0.0047 17.5 3.9 1 23 920 942 920 942 0.97

9 18 0.00061 0.052 14.2 1.1 1 20 947 966 947 968 0.94

10 18 0.038 3.2 8.6 0.6 2 23 979 1000 979 1000 0.97

11 18 1.5e-05 0.0012 19.3 0.7 2 23 1039 1060 1038 1060 0.97

12 18 3e-05 0.0025 18.4 1.6 1 23 1065 1087 1065 1087 0.95

13 18 9.6e-05 0.0081 16.7 1.8 1 23 1093 1115 1093 1115 0.98

14 18 5.2e-06 0.00044 20.7 0.4 1 23 1131 1153 1131 1153 0.95

15 18 1.7e-06 0.00014 22.3 0.3 1 23 1159 1181 1159 1181 0.99

16 18 3.2e-05 0.0027 18.3 0.3 1 23 1187 1209 1187 1209 0.98

17 18 0.00017 0.014 16.0 4.1 1 23 1215 1237 1215 1237 0.96

18 18 0.012 1 10.1 0.4 1 20 1243 1262 1243 1264 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.015	1.3	9.8	2.0	1	23	353	375	353	375	0.95
2	18	0.03	2.5	8.9	0.6	2	23	424	445	423	445	0.95
3	18	0.00027	0.023	15.3	1.5	1	23	547	569	547	569	0.96
4	18	0.00052	0.044	14.4	3.8	2	23	665	686	664	686	0.97
5	18	0.00012	0.01	16.4	1.7	2	23	692	713	691	714	0.94
6	18	0.00055	0.046	14.4	0.4	1	20	721	740	721	745	0.92
7	18	0.00011	0.0094	16.5	2.3	1	23	842	864	842	864	0.97
8	18	5.6e-05	0.0047	17.5	3.9	1	23	920	942	920	942	0.97
9	18	0.00061	0.052	14.2	1.1	1	20	947	966	947	968	0.94
10	18	0.038	3.2	8.6	0.6	2	23	979	1000	979	1000	0.97
11	18	1.5e-05	0.0012	19.3	0.7	2	23	1039	1060	1038	1060	0.97
12	18	3e-05	0.0025	18.4	1.6	1	23	1065	1087	1065	1087	0.95
13	18	9.6e-05	0.0081	16.7	1.8	1	23	1093	1115	1093	1115	0.98
14	18	5.2e-06	0.00044	20.7	0.4	1	23	1131	1153	1131	1153	0.95
15	18	1.7e-06	0.00014	22.3	0.3	1	23	1159	1181	1159	1181	0.99
16	18	3.2e-05	0.0027	18.3	0.3	1	23	1187	1209	1187	1209	0.98
17	18	0.00017	0.014	16.0	4.1	1	23	1215	1237	1215	1237	0.96
18	18	0.012	1	10.1	0.4	1	20	1243	1262	1243	1264	0.89

Sequence Information

Coding Sequence: atggacgCCGTAGAGATTGCTACGGCGGAGGAATCTCACAACGAAGACACGATAGAAGAAACCGTGCCCGAGGTCTGTCGTGTCTGTTTGCTCGGGCATGTAATAATGCGCGATCTCTTCGTCGAGAACGAGGTCGTCTCGCTCTCGACCAAAGCCATGAGCTTCGCCAGCGTCAAGATGTTGCCCGAGGATGGTTTACCGGGGCAAGTTTGTTGCGAATGCGCTGACAAGCTCGAAGCGGCCTATGAGTTTAAACTCCAGGTGGAACAAGCCGACAATGTATTGAGACAAAGATACGACActttaaatatcaaagaaGAGCTTTTCTTCAACGAGGTCGAGGTTCATCTCGAGGGGGAAAGAGGTCACGACGTTCACTCTCTGGACGTCGACGCTCATTATCAAGCGACCGTCGACAGTCTGAACGCTGTCGAGCCGGAGGATGAAAAACCATCGCTGCTCAAGGATCATCTGGCGCTGCTGGAAGTCGAGAAACTTGCGAAAGAACAGGGTGACCTTGAAGCTGATAACAAAGACGTCGTCTCGATGGGGGATGAGAGCAGGGTGGGCGAAATGCTTCGCGGGGACGACGATCATACCGGTTATCTTCGCGACGATGTCGAAAACGTCGAGGAATTGGTCGATTAcgaagaaacggaaaaaaacgagagtatGAACGAAGGCGTAACCGTCGATGAGCACAATTACATAATGCAACAGGGTTACTCATTAGCGCCTAACGAGGATGAGCTAGGAACGCGAGAAAATTGCGACTCCACGGCGAACGACGAGTCCGTGAATTATCTGTCTCTCATGGAGGACGATATGAGCGTCGAGGATGACCCGAACGAGTCAGAAATCTTGAACAGCGTCGATACCGAAGACCAGGACGAAAAAACATCGTTGaaagaagatttttcgatggaGACAAGACGGAGCAAAAGAAGATTGACGAAACGCTCCCGGGACACCGACGAGGACaattatttcgagaatttaaatCTCAGCAGTCGCTTAAAAAGAACCCAGACGATCGAGAAGGgtgagaaattttattttctctgttATTTGTGCGACAAGCAATTCGTCTCGAAGGAAATACTGAAAGAGCACATGCATTCGCACGAGGAAGTCAGACGGACGATGTcattgaagaaaaacgaaaagggagaaaaacgtTTAGCGAGTCCGACGAAAACGACGCCAGCGCCAACGACGGCGAGTTCGCCAAGCTCGGGCGGACAATCAATGTCCGGCAAAAAAGCCAACAAGTGTCCTTACTGCGGCAAAGAATATCTTTACGTCATATCTTTCAATAAACATCTCAAACaacacgagaaaaataaagaatcgtCGACGGAAATTTGGCCGGAAGAACCGATGGACACGGGCGAGGATTCCTCCTCGGATTTCGTCGGTTACGATGAAACGCGAATCTCCGAGGCGACATCTCGCGTCGAGGCGAGCAACGACGATGTTTCCATCGATTTGAATGTCGAAGAAACGAGTCCTGGAAGGAAAAATGCTCGGCGACGTTCCATTCGTAACGAAACAACGGCATTTTCTGGCGAAAAATATCCGGAAAGATTCCCTAATAAACATGAACTTGCCGAGCACGGGATCGAACACTGTACGACCTTCAAATGTAGCACTTGCGATCGCGATTTCGAGGATCTTGAGAAACTGCGAAGACATCGTACCGAGCACGTGGTCGAGGGTGTTCTCTCGGAGCAAGATCTCGAGGATAacgcgtacgagagagaattcGAAACGCCAAACGACGCTGAAAATGAGATTTTTGGAGAAATGGTCGAAGGTCAAAGCGAGGACGTTGGAAGTCAGGAACATTCGAACGAGGCGGATGGCGAGAATAATTGGCGATTGGTCGGAATCGAGGGCGAAGACTCGGCAGACGGAAAAAATCCCCTCGTACCGGAGACCAGTGAATCCTTGACCGGGAATGCTGGAAATTGGCCGGAAACGCGTAATCTTCGATGTCCTCATTGCTCGATCTTCTGCTCCAGTAAAAAATCACTCGCGCGTCACATCGAGACCCACAAGAGTTCCAGACAAGTTTGTAAATTGTGCAAAATGGAATTTCCACGGAAGGAACAACTGCAACGCCATATCGAGCAACATCACGCCGGTAGAACCAAGAATTTCAACTGTACGGACTGTGGCAAAGTCTTTGGCAACGAGCTTACCCTCAGAAATCATTTATTCGCTACGAATCACAAGACGATAATTCACGGCCAGCAATACGATCCTAACAAAAGATTGAAACGCGTCGCGGCTAAAGCGGCGCAGAGGATAATCGACAAGATCAAGACGGAGGACGATCTGGACGAGGAAGAAACGGAGGGgatcgacgaggacgagagaacGGAGGAGAACGACGGAGAAACGACGGAAAGTCGCAACTCAAGGTCGAGCAACGCTCGTTGGTCGCGTCAGGTCGAGAGACAACAAGGCGCCGCGTCACGAAGAAAAGTTCAACAACATCGCGGTCGTCGAAGATGCGACTACGAGTGCGAAGCTTGCGGACGGAAATGCAGCTCGAAGCAATCTTTGACGAAGCACATGGAACAGCATCGTGCCAAAGACGAGAAGATCGAATCAATGGAAAAATCGGGAAGGAGCGAAGCGGAGCGTGGTTTGCGACAACCAGGCTCgagaatcgatgataaaaacgaGGAGGAAaccgagaacgacgagaattcCGATTTTGAGAGCGGTCTCGATTGGCCAATGGACAATCACGAATGTCCGACTTGCAAGAAGAAATACAGCACGAAAAAATCCCTTCTTCGCCATCAGCTTTTGCACGAGGAGCCAAATTTCGAATGCGACATATGCAACGTCAAGTTTTATCGCAAGGACAAACTCAAATCGCATTACGACAAATGCTCGGAAAAAAATCCCGATCAAGTGAGAAAATGCAATATATGTGGGGATAGTTTTGAgaacaatgaaatattaaagGAGCACAAGAATCGTCACGTCGACGAGGGAATTCTGACCGAGGAGGATCTTCGAGACATAGAACCAGGTTTcgaggagagacgagagtcgCGCAAGgtcgcgagaaaaagaagagacgatATCGTCGGTCTCGAGTGCACCGAGTGCAACAAACGTTACACGTCGAGGAAAGGACTGCTGCGACACATACAAGTACACGAGGGTAAGAAGTATCTCTGCGATATTTGTCCGAAGAAATTTTATCGCCGTGAACATTTGAAAATTCACGTGGCTAAACATAACATGATAAAACCTTATAAATGTCCACGCTGTACCAAGCGTTTCATCAAGGAAGAACAATTATCGAATCATCTGTCGAAACACGATAGGACCTTTAAAAAACCTAAGGAGGCCGATACAGCCAAGAGATTTTTGTGCGAGATTTGTTCCAAGAGCTTTACTCAGTCTACGACTCTCATAGCTCATCTCAGAGCACATAATGGTATCAAACCTTACGTTTGCGAAGTTTGCGCTCGACCTTTTACTACCAACGCTTATTTGAAAATGCACATGAGGACTCACACTCAGGAAAGACCTTACAGTTGTCAATATTGCTCGAGAGCGTTTGCGCGCGCAGATACTCTGGCGAATCACCTAACCTCGCATACCGGGGAGGCGAAATATCATTGCAAATATTGTCCGAAGAATTTTCGACGTCTCAAATCTCTCAAGGAACATGTTTTCATTCATACGGGCCAACGACCTTATGCCTGTCCTACCTGTGATCGTCGTTTCAATAATAACGGCAGTCGTTATGCTCATAGCAAGAGATGCAAGCAAAATGTCATGCAGAGTCAGAATCGAGCACAGGCTGGTCATATGACCGGCGCCATCTTGCAGAATACGATGGCTCAGCCAATAAGGCTGCAGCAGTTCACGGGTCAGGAACACACCTCGCAGATGCAAGTTGTCAAGTCACAGAGTATCAAGACGATTACGATCGCGAGACAGAGCGATCAATTGACCGGGCATCAAGTTATGCAACATCAGGAAATTCTCATGCCGCTTATTTTACCGCTTACCGTCACGCTCACGGACGTTGACGAGGAGGTCATTTTACCGGAGGGCACGAAGATCTTTACCACGGCTTGA
Protein Sequence: MDAVEIATAEESHNEDTIEETVPEVCRVCLLGHVIMRDLFVENEVVSLSTKAMSFASVKMLPEDGLPGQVCCECADKLEAAYEFKLQVEQADNVLRQRYDTLNIKEELFFNEVEVHLEGERGHDVHSLDVDAHYQATVDSLNAVEPEDEKPSLLKDHLALLEVEKLAKEQGDLEADNKDVVSMGDESRVGEMLRGDDDHTGYLRDDVENVEELVDYEETEKNESMNEGVTVDEHNYIMQQGYSLAPNEDELGTRENCDSTANDESVNYLSLMEDDMSVEDDPNESEILNSVDTEDQDEKTSLKEDFSMETRRSKRRLTKRSRDTDEDNYFENLNLSSRLKRTQTIEKGEKFYFLCYLCDKQFVSKEILKEHMHSHEEVRRTMSLKKNEKGEKRLASPTKTTPAPTTASSPSSGGQSMSGKKANKCPYCGKEYLYVISFNKHLKQHEKNKESSTEIWPEEPMDTGEDSSSDFVGYDETRISEATSRVEASNDDVSIDLNVEETSPGRKNARRRSIRNETTAFSGEKYPERFPNKHELAEHGIEHCTTFKCSTCDRDFEDLEKLRRHRTEHVVEGVLSEQDLEDNAYEREFETPNDAENEIFGEMVEGQSEDVGSQEHSNEADGENNWRLVGIEGEDSADGKNPLVPETSESLTGNAGNWPETRNLRCPHCSIFCSSKKSLARHIETHKSSRQVCKLCKMEFPRKEQLQRHIEQHHAGRTKNFNCTDCGKVFGNELTLRNHLFATNHKTIIHGQQYDPNKRLKRVAAKAAQRIIDKIKTEDDLDEEETEGIDEDERTEENDGETTESRNSRSSNARWSRQVERQQGAASRRKVQQHRGRRRCDYECEACGRKCSSKQSLTKHMEQHRAKDEKIESMEKSGRSEAERGLRQPGSRIDDKNEEETENDENSDFESGLDWPMDNHECPTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKSHYDKCSEKNPDQVRKCNICGDSFENNEILKEHKNRHVDEGILTEEDLRDIEPGFEERRESRKVARKRRDDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCTKRFIKEEQLSNHLSKHDRTFKKPKEADTAKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNVMQSQNRAQAGHMTGAILQNTMAQPIRLQQFTGQEHTSQMQVVKSQSIKTITIARQSDQLTGHQVMQHQEILMPLILPLTVTLTDVDEEVILPEGTKIFTTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01057076;
90% Identity: iTF_01056246;
80% Identity: -