Ntho006416.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- -
- Assembly
- GCA_964017225.1
- Location
- OZ024921.1:30618752-30623315[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.052 3.9 8.2 1.3 1 23 355 377 355 377 0.95 2 19 0.032 2.4 8.9 0.6 2 23 423 444 422 444 0.95 3 19 0.00087 0.066 13.8 0.1 1 23 520 542 520 542 0.94 4 19 0.0049 0.37 11.5 0.5 2 23 547 568 546 568 0.95 5 19 0.0033 0.25 12.0 3.5 2 23 665 686 664 686 0.97 6 19 3.3e-05 0.0025 18.3 2.5 2 23 692 713 692 714 0.95 7 19 0.00073 0.055 14.1 0.3 1 20 721 740 721 745 0.92 8 19 0.00012 0.009 16.5 2.3 1 23 842 864 842 864 0.97 9 19 6e-05 0.0045 17.5 3.9 1 23 917 939 917 939 0.97 10 19 0.00065 0.049 14.2 1.1 1 20 944 963 944 965 0.94 11 19 0.15 11 6.8 0.4 2 23 976 997 976 997 0.97 12 19 1.6e-05 0.0012 19.3 0.7 2 23 1036 1057 1035 1057 0.97 13 19 3.2e-05 0.0024 18.4 1.6 1 23 1062 1084 1062 1084 0.95 14 19 0.0001 0.0077 16.8 1.8 1 23 1090 1112 1090 1112 0.98 15 19 5.6e-06 0.00042 20.7 0.4 1 23 1128 1150 1128 1150 0.95 16 19 1.8e-06 0.00013 22.3 0.3 1 23 1156 1178 1156 1178 0.99 17 19 3.4e-05 0.0025 18.3 0.3 1 23 1184 1206 1184 1206 0.98 18 19 0.00018 0.014 16.0 4.1 1 23 1212 1234 1212 1234 0.96 19 19 0.013 0.97 10.1 0.4 1 20 1240 1259 1240 1261 0.89
Sequence Information
- Coding Sequence
- atggacGCCGTAGAGATTGCTACGGCGGAGGAAACTCACAACGAAGACACGATAGAGGAAACCGTGCCCGAGGTCTGTCGTGTCTGTTTGCTCGGGCATGTAATAATGCGCGATCTCTTCGTCGAGAACGAGGTCGTCTCGCTCTCGACCAAAGCAATGAGCTTCGCCAGCGTCAAGATGTTGCCGGAGGATGGTTTGCCGGGTCAAGTGTGCTGCGAATGCGCGGACAAGCTCGAAGCCGCGTACGAGTTTAAACTCCAGGTGGAACAAGCCGACAATGTATTGAGACAGAGATACGACACTCTAAATATCAAAGAAGAACTTTTCTTCAACGAAGTCGAGGTTCATCTCGATGGCGACAGAGGTCACGACGTTCACTCTCTCGACGTCGACGCTCATTACCAAGCGACCGTCGACAGTTTGAACGCCGTTGAGACCGAGGACGAAAAACCTTCGTTGCTCAAAGATCATCTGGCTCTTCTCGAAGTCGAAAAACTTGCGAAACAACAAGCTGACCTTGAAACCGATAACAAAAACGTCGTATCGATCCAGGAGGAAAGCGAAGTCGCCGAAATTCTTCGTCACGACGACGATCATACGGATTATTTGCGCGACGAGGATGAAAACGTCGAGGAATTGGTCGATTACGAAGATACGGAGAAAACCGAGACTATCCACGTTCCCGAGGGTGTCACCGTCGAGGAACACAATTATATAATGCAACAGGGTTATTCCTTAGAGTCCAACGAGGAAGAATTAATAACTCGGGAAAGTTGCGATTCCACGGGTAACGACGAGTCCGTGAATTATTTATCCCTCATAGAGGACGATATGAGCGTCGAGAATGATCCGAACGAGACGGAAATGTTGCAGAACGTCGAAAACAATGACGAGAAGAATttaacgaaagaagaagaaatttcgCCGTGCGAGACGCGACGTAGTAAACGAAAAACGACGAAACGCTCGGGCGAAATGGACGAGGACAATTATTTCGAGAATTTGAATCTCAGCAGTCGTTTGAAAAGATCACGGGCGATCGATAAAggtgagaaatattattttctctgTTATCTGTGCGACGAGCAATTCGTCTCGAAGGAAATCCTCAAAGAGCACATGCATTCGCACGAGGAGGTGAGACGCGCGATGTcgttgaagaaaaacgagagggGTGAAAAGCGTTTGTCGAGTCCGACGAAAGCGCCGCCGGTGGCGACTTCGCCAAGCTCCGGCGGACAATCGATGTCCGGTAAAAAAGCGAATAAATGTCCTTATTGCGGCAAGGAATATCTTTACGTGATATCATTCAATAAACATCTCAAACAacacgagaaaaataaagaaacatcgAGGGAAATGTGGTCGGAAGAACCGATGGACACTGCCGAAGATTCTTCCTCCGATTTCGTCGGTTACGAAGAGACGCGAGAGTCCGAGGCGACATCTCGCGTCGAACCGAGCAACGAGGACGTTTCCGTCGATTCGAACGCGGAAATAACGAGTCCCGAAAGGAAAAATACTCGTAGACGTTCCATTCGTAACGAAACATTGGTTTTTCCATGCGAAAAGTGTCCGGAAAGATTCGATAATAAGCGTGACCTTGCGGAACACGCGATCGAACACTGTACGACCTTGAAATGTAGCACGTGCGATCGAGATTTCGAGGGTCTCGAGAAACTTCGAAGACATCGAGCGGAACACGTGGTCGAGGGTGTTCTCTCGGAGCAGGATCTCGAGGATAACGCTTACGAGAGAGAATTCGAGACgcaaaacgacgcggataatgtaATTTTCGGAGAAATGGCTGAAGGTCAAAGCGAGGACGTTGGAAATCAGGAACAAACGAACGAGACGGACGGTGAAAATAATTGGCGATTGGTCGGTATGGAAGGGGACGAATCAGCCGATGGTAAAGATCCTCTGATACCGGAAACCGGTGAATCTCCGACCGGAAACGCGGCTGAAAATTGGCCGGAAACGCGAAATCTCCGGTGTCCTCACTGTTCGATCTATTGTTCGAGCAAAAAGTCACTCGCTCGTCACGTCGAGACTCACGAAAACTCTCGACGAGTCTGTAAATTGTGCAAAATTGAATTCTCGCGTAAAGAACAACTGCAGCGCCATCTCGAGACGCATCACGGCGGTAAAAGCAAGTCTTTCGACTGTACCGACTGTGGTAAAGTTTTCGGTAACGAACTTACCCTGAGAAATCATTTATTCGCTACTAATCATAAGACAATGATTCACGGACAACAATACGATCCTAATAAACGCTTGAAACGCGTCGCGGCTAAAGCAGCGCAgagaataatcgataaaatcaagACGGAGGACGATTTGGACGACGAGGAGACCGAGAGAATCGACGAGGAgcaaataagggatgaaaacgaTGGAGAAACGATGGAATCTCGAAATTCCAGGTCCAACGACTCTCGTTGGTCTCGTCAGGTCGATAGACAACAGGGCGCTGCCTCGAGGAGAAAAGGTCAACAACATCGCGGTCGTCGAAGATGCGATTACGAGTGCGAAGCTTGCGGACGGAAATGCAGCTCGAAGCAATCTTTGACAAAACACATGGAACAACATCGTCTCAAGGACGAAAAGGTCGAAGTTAATGAAAAATCGAGAAGAAACGATGGCTCGCGTCAATCAGTCTCGAGAATCGATGAGAAAAACGAGGAGGAGACGGAGAACGACGAGAATTCCGATTTCGAGAGCGGTCTCGACTGGCCAATGGACAATCACGAGTGTCCCACCTGTAAGAAGAAATACAGCACGAAAAAATCCCTTCTGCGTCATCAACTTTTGCACGAGGAGCCAAATTTCGAATGCGACATTTGCAATGTGAAATTTTATCGCAAGGACAAACTCAAGTCTCATTACGACAAATGCTCGGAGAAGAATCCGGATCAAGTTAGAAAATGCAACATATGCGGCGATATTTTCGAGAATAATGAAATATTGAAGGAGCACAAAAATCGTCACGTAGACGAGGGAATTCTCACGGAGGAGGATCTTCGTGATATCGAGCCGGGTTTCGAGGAGAGACGAGAATCTCGCAAGGTCGCGAGGAAAAGAAGAGACGATATCGTCGGTCTCGAATGTACCGAGTGTAACAAACGTTATACCTCGCGGAAAGGTTTGTTAAGGCATATACAGGTTCACGAGGGTAAGAAGTATCTTTGCGATATTTGTCCGAAGAAATTTTATCGGCGGGAACATTTGAAAATTCATGTCGCCAAGCATAATATGATAAAGCCTTATAAATGTCCGCGATGTACCAAGCGTTTCATCAAAGAGGAACAATTGTCGAATCATTTGTCGAAACACGATAGAACGTTCAAAAAACCGAAGGAAACGGATACGGTTAAGAGATTTTTGTGCGAGATTTGTTCCAAGAGTTTTACCCAATCTACGACCTTAATTGCTCATCTTCGGGCTCATAATGGTATTAAACCTTACGTTTGCGAGGTTTGCGCGCGTCCTTTTACGACAAACGCTTATTTAAAAATGCATATGAGGACTCATACGCAGGAGAGACCTTACAGTTGTCAATATTGTTCGCGGGCTTTTGCGCGCGCAGATACTCTCGCGAATCACCTAACCTCGCATACCGGCGAGGCGAAATATCATTGTAAATATTGTCCGAAGAATTTTCGACGTCTTAAATCCCTGAAAGAACATGTTTTCATTCATACGGGCCAACGACCTTACGCCTGTCCGACCTGCGATCGTCGTTTCAATAATAACGGCAGTCGTTACGCTCATAGCAAGAGATGCAAGCAAAATGTCGTGCAGAGTCAGAATCGTACACAGCCCGGTCACGTGACCGGCGCCATTTTGCAAAATAACATGGCGCAGCCAATAAGGCTGCATCAGTTTACGGGACAGGAACACGGCTCGCAGATGCAAGTTGTCAAGTCTCAGAGTATCAAGACGATTACGATCGCGAGACAGAGCGATCAATTGACCGGGCATCAAGTTATGCAACATCAGGAAATTCTCATGCCCCTTATTTTACCGCTTACCGTCACGTTAACGGACGTTGACGAGGAGGTCATTTTACCGGAGGGCACGAAGATCTTTACCACGGCTTGa
- Protein Sequence
- MDAVEIATAEETHNEDTIEETVPEVCRVCLLGHVIMRDLFVENEVVSLSTKAMSFASVKMLPEDGLPGQVCCECADKLEAAYEFKLQVEQADNVLRQRYDTLNIKEELFFNEVEVHLDGDRGHDVHSLDVDAHYQATVDSLNAVETEDEKPSLLKDHLALLEVEKLAKQQADLETDNKNVVSIQEESEVAEILRHDDDHTDYLRDEDENVEELVDYEDTEKTETIHVPEGVTVEEHNYIMQQGYSLESNEEELITRESCDSTGNDESVNYLSLIEDDMSVENDPNETEMLQNVENNDEKNLTKEEEISPCETRRSKRKTTKRSGEMDEDNYFENLNLSSRLKRSRAIDKGEKYYFLCYLCDEQFVSKEILKEHMHSHEEVRRAMSLKKNERGEKRLSSPTKAPPVATSPSSGGQSMSGKKANKCPYCGKEYLYVISFNKHLKQHEKNKETSREMWSEEPMDTAEDSSSDFVGYEETRESEATSRVEPSNEDVSVDSNAEITSPERKNTRRRSIRNETLVFPCEKCPERFDNKRDLAEHAIEHCTTLKCSTCDRDFEGLEKLRRHRAEHVVEGVLSEQDLEDNAYEREFETQNDADNVIFGEMAEGQSEDVGNQEQTNETDGENNWRLVGMEGDESADGKDPLIPETGESPTGNAAENWPETRNLRCPHCSIYCSSKKSLARHVETHENSRRVCKLCKIEFSRKEQLQRHLETHHGGKSKSFDCTDCGKVFGNELTLRNHLFATNHKTMIHGQQYDPNKRLKRVAAKAAQRIIDKIKTEDDLDDEETERIDEEQIRDENDGETMESRNSRSNDSRWSRQVDRQQGAASRRKGQQHRGRRRCDYECEACGRKCSSKQSLTKHMEQHRLKDEKVEVNEKSRRNDGSRQSVSRIDEKNEEETENDENSDFESGLDWPMDNHECPTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKSHYDKCSEKNPDQVRKCNICGDIFENNEILKEHKNRHVDEGILTEEDLRDIEPGFEERRESRKVARKRRDDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCTKRFIKEEQLSNHLSKHDRTFKKPKETDTVKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNVVQSQNRTQPGHVTGAILQNNMAQPIRLHQFTGQEHGSQMQVVKSQSIKTITIARQSDQLTGHQVMQHQEILMPLILPLTVTLTDVDEEVILPEGTKIFTTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01057820; iTF_01056246;
- 90% Identity
- -
- 80% Identity
- -