Nmel018189.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- bab2
- Assembly
- GCA_964007305.1
- Location
- OZ023258.1:772870-791467[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.6e-12 2e-09 37.6 0.0 1 39 387 426 387 430 0.90 2 4 7.8e-12 6e-09 36.1 0.1 2 39 442 479 441 482 0.94 3 4 4.6e-18 3.5e-15 56.0 0.0 2 45 497 541 496 541 0.97 4 4 4.7e-17 3.6e-14 52.8 0.0 1 42 548 590 548 591 0.95
Sequence Information
- Coding Sequence
- ATGATGCCACGTTATTGGGGCGCTCATTACAGCGGAGGCATGGCCGGGCAGCACTACTGCCTGCGCTGGAACAATTACCAGTCAAATATGACGTCGGTTTTTCATCAGCTGCTACAGACGGAGGCCTTCGTGGACGTCACCCTGGCCTGCAACGAGGCTTCGTTAAAGGCGCACAAGGTTGTTTTATCGGCGTGCAGTTCGTACTTCAAGAAGCTATTGCTGTCCAATCCCTGCAAACATCCAACGATAATAATGCCGCAAGACGTGTGCTTCAACGATCTCAAATTCATCATAGAATTTGTCTACAAGGGAGAGATCGACGTGTCACAGGCTGAGCTTCAGtcctTGCTGAAGACGGCAGATCAGTTGAAAATCAAGGGCCTCTGCGAGGTCCCGGAGAGCAGGGAAGGACCGCCCTCAGTTAGCCTGAGTTCACCACCGACGCGGGATTCCACAGCGACGAGGATCAACTACACGAAACTAAAGAGGCATCATCCGCGTTATAAGAGGCAAAGAACGTCCTTCGAGCCACGGGCTACGAGTCCGGACTCGCATCACTACGACAAGTACAAGGAGGAGGAACACAACATCGAAGGCCTCGGCCGTGACAACAATAAAGAGAATCACAGAGGTGACTGGCAGACGGAGGATGAGGAGTGCGGCGCGGATGCAGCATCAGTAGTCCTGGAATCCTGCCAGCGCGACAGCAACAACGGTAACGGTACAAACAACAATAACGGTGACATGTTCTGTCACACAGGTCTAGGTCATTACGGTCATCATCCCGATCCTGGAGAGGTAGATCTACCGCCCGAGACACAGCCGACACCACCGAGCGCTACTCTCGTCGGGACAACGATAACGCATCTTCGCGACACCGATCATCACTCGACGGATATACAGAATTGCGACAGCGTAAAGATCAAATTCGAGACCCTTCACACGATGGATTCGTCCGACACGATCGACATCGACAGTCACATGTCCGATCGTGCCAGTGTGAGCTCGAAACACGCGGCCGATAACGACAATATGATGATGATAACGCCGGAACTCTTGGGCCTAATGCCCTCCGGAAGTTCGGTACACTCCGACTCGGGTGAGAATAATTCACGAGGAGGCGGCTCCGGCTCTCATCATCACGGCTCGAAATCGTGGACTCAGGAAGATATGGACGCGGCCCTCGAGGCACTCAGAAATCACGATATGAGCCTCACAAAAGCGTCAGCGACCTTTGGAATTCCGTCGACGACGCTATGGCAAAGAGCGCACAGACTGGGCATCGACACGCCGAAGAAAGACGGTCCGACCAAATCGTGGAGTGACGAGAGTCTCAACAACGCACTCGACGCATTGAGAACCGGCACGATATCCGCGAACAAAGCATCCAAAGCGTATGGCATACCGTCTAGCACACTCTACAAAATCGCGAGAAGAGAGGGCATAAGGCTCGCGGCGCCCTTCAATGCTAGTCCAACGACATGGGCGCCCGCCGATCTCGATCGAGCACTCGAAGCGATCAGATCGGGTCAGACCTCGGTGCAACGCGCCTCCACGGAATTTGGAATTCCAACGGGCACTCTATACGGCAGgtgcaagagagagggaattgAATTGAGCAGAAGCAATCCTACACCGTGGAGCGAGGATGCTATGACAGAAGCACTCGAGGCTGTAAGATTGGGTCACATGAGCATAAATCAAGCCGCGATACACTACAACCTTCCATACTCGTCGCTCTACGGCCGTTTCAAGAGATGCAAGTACGAGGATCCTGTGGTCAGTGAGATGTCGCAAGACGGCAGCCATCCGCATTTTCATTCGCATCAGAGCCCGCATCAGAATCACTCGTCATCGCTTCCCGACCAAATGCCTTATCAGGGAAGCTGA
- Protein Sequence
- MMPRYWGAHYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFKKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCEVPESREGPPSVSLSSPPTRDSTATRINYTKLKRHHPRYKRQRTSFEPRATSPDSHHYDKYKEEEHNIEGLGRDNNKENHRGDWQTEDEECGADAASVVLESCQRDSNNGNGTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKHAADNDNMMMITPELLGLMPSGSSVHSDSGENNSRGGGSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWAPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRCKYEDPVVSEMSQDGSHPHFHSHQSPHQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01560354;
- 80% Identity
- iTF_01056174;