Ngue043992.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nephrotoma guestfalica
Gene Symbol
-
Assembly
GCA_963691935.1
Location
OY829915.1:28116363-28118942[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.1e-10 6.7e-07 30.8 0.0 1 35 9 44 9 48 0.94

Sequence Information

Coding Sequence
atgccaAGAAAAAGAGACACATTTGATGAAGACCAGGTTCAAAAGGCATTAGGTGAAATAAGAAACGGCCAAATTAGTAAAAAGGCGGCagccaaaaaatataatgtgCCTAGATCAACGCTTCAATTTCGATTAGGGTCGAATTTTTCTAAAGCTCGACCAGGCCCACCAACAATCCTAACCGAAGAAGAAGAGCAAGGCATTGTTGAATGGATAAAAATTTCCCAACAAAAAGGATTCCCGAAGCGAAACGAGGATCTTGTTACAGCAGTAAAAGAATTTTTAGAAGATACTGATAGACCTCATCCATTTGGTGAGAACAAAATTCCAGGAAAGGGTTGGTTTAAAGCTTTTTTAAAACGATATCCGTCTCTATCGCTTCGAGCTAGTGATCCTGTTTCGGCAGCAAGTGCTACAGTTGCTGCTTCAGATATTTATTCATGGTTCGAtacaatagaaatttttttaaaagatcaCGACTATTATGATATATTAGAAGATCCAACACGAATTTTTAACGGAGACGAgacgaattttcttttatgtccTAAAACTAAAAACGTTTTGGCAGCGAAAGGCTCTCGAAATGTATACGAAATTGACAAAGGATTGGCCAAAGCAAATTTAACGGCCATGTTTACCTTTTCTGCTGCCGGAGTGTTAACCCCTACCATGATAATCTACCCATATAAAAGAATACCGGAAGAAATTCGTAAATCGTTGCCTAAAGGATGGGGAATTGGAATCAGTGACAACGGGTGGATGACAAAACAAGtattttacgagtatatatcaaAGGTTTTGCATCCGTATTTAGTGCAGCTGGGCACTAAATTTCccgttgtatattttgttgacgGGCACTCAACCCATCTAACGTTACCTGTGAGTGAGCTGTGTGTGAAActgcaaattattttagtagCATTATATGCAAATGCTACTAGAATATTACAGCCCGCTGATGTGGCAGCATTCAAACCGTTGAAACCGTCTTGGAATCGGAAAGTTTTAGAATGGCGACGTAATAATCCTAGTGCCTCTttaactaaagaaaaatttgcaCCATTATTATATGATGTTGTGGAAAGTACTGTGTGTAAAGAGACTATTCAGAAGGGCTTCAAGGCATGTGGCCTCTTTCCATTCaacaaatttgcaattaatttatcgaaatgCTTAGGAAGATCATCGCCTAAATCTACATATGGCAGTCGACTAAATCCCAAATCACCGGACGATGGATTTCAAACGCGGTGTGAAGCAATCGGTgataacaaaattcaactattCGAAAGTATCGACCGAGGTGAACTTCAAAAAGATAGCTTCAACGAAGATTTcgtaattttatatgatttatataaCAAGTTTAAATccaaaggaaaattaaatctaaGTGTTTCAGATAAATCAACACAAACGCACGTTGAATATCAGAATATAGAAACCTCAGAAATAGACATCAGTGCCAtcgatgaattttttataattcaagaTCCGCCAAGTACGGCAAAtgacgaaattataaatatttccaatgTCATTCCCATTCAACAGTCCACAGAACTACAAACAGTGACATACATAACTGTTCCTCCGCAAAGCACTACGGCAATAATTGATGATTTCCTACCTTGGCGAGAGACTCCCTTGAGAAAAGGTTGCAAAAcggacaaaattaaaaagccaTATGTGGTTACTTCTCCGCTGTGGATAAAACAAGCACAACTAAAAAAAgatcaacttaaaaaaattgaattagaaaAGGAAAACCGCAAAATTTTACGAATGAAAAATAAGGAGTTAAAAAATGCAGAAAAACTGAATAAATCGAAACGCCCACGCAAAGAAAATGCAAAGTCTAAGAAGTTTTCAAGTACGACAACTTCTACAAATGTGTTAGTTGCAATTGAAAATACAGGGCAGAGTAGTATTGAAGGAAATAGGGACATGCGAATCTACGAACAGTTAAATTGTCATAGCAATAATAAAAGTTGTCTAGTTGAGACTCCCGATTTTAATGAACAACTTTCTATTGTAGAACCAATTATCAAACTCAATGAAATGGATGAATCTTCCGGAAGATATCAATCTACTACAAATACGACGACGTCAAGCAGCGTGGAGCCAATCAAAGACACTCTGCAAAAGTTTGAGCAGATACAGAAACTACAAAGCATCAAAAACGATCAAAATGAACTTCTAGGTAAAACGATACCTCATGAAACCATTGTCAAACCGTTcctaaaaaacaaagaaatacgTAAAGAAGATAAAACGGGCTTCAAACATATACTTTCTACATCGCACAGAGCGTCGATTATTAGTGAGCCACCGAAAGATCATCATGTTCGTAAACTTTTTTGTACTGATGTGGTACTGGACATTGGAGATAATTCACCTGCAGCTGGAAAGATGTGCTATCATTGCACCTATGCCTTTACGGGAAATTCTGGTTCTGAGAATTTCGGCATAAAGTGCCAAAGTTGTACGAGAGAATTTCATCTTAAATGtcttataaaactaaaaatacagtACAATCCAAGACTTATTTGCAATGGATGCAAAATATTGTGA
Protein Sequence
MPRKRDTFDEDQVQKALGEIRNGQISKKAAAKKYNVPRSTLQFRLGSNFSKARPGPPTILTEEEEQGIVEWIKISQQKGFPKRNEDLVTAVKEFLEDTDRPHPFGENKIPGKGWFKAFLKRYPSLSLRASDPVSAASATVAASDIYSWFDTIEIFLKDHDYYDILEDPTRIFNGDETNFLLCPKTKNVLAAKGSRNVYEIDKGLAKANLTAMFTFSAAGVLTPTMIIYPYKRIPEEIRKSLPKGWGIGISDNGWMTKQVFYEYISKVLHPYLVQLGTKFPVVYFVDGHSTHLTLPVSELCVKLQIILVALYANATRILQPADVAAFKPLKPSWNRKVLEWRRNNPSASLTKEKFAPLLYDVVESTVCKETIQKGFKACGLFPFNKFAINLSKCLGRSSPKSTYGSRLNPKSPDDGFQTRCEAIGDNKIQLFESIDRGELQKDSFNEDFVILYDLYNKFKSKGKLNLSVSDKSTQTHVEYQNIETSEIDISAIDEFFIIQDPPSTANDEIINISNVIPIQQSTELQTVTYITVPPQSTTAIIDDFLPWRETPLRKGCKTDKIKKPYVVTSPLWIKQAQLKKDQLKKIELEKENRKILRMKNKELKNAEKLNKSKRPRKENAKSKKFSSTTTSTNVLVAIENTGQSSIEGNRDMRIYEQLNCHSNNKSCLVETPDFNEQLSIVEPIIKLNEMDESSGRYQSTTNTTTSSSVEPIKDTLQKFEQIQKLQSIKNDQNELLGKTIPHETIVKPFLKNKEIRKEDKTGFKHILSTSHRASIISEPPKDHHVRKLFCTDVVLDIGDNSPAAGKMCYHCTYAFTGNSGSENFGIKCQSCTREFHLKCLIKLKIQYNPRLICNGCKIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01054229; iTF_01457260; iTF_01457261; iTF_01054236; iTF_01054239; iTF_01054253; iTF_01054228;
90% Identity
iTF_01054236;
80% Identity
-