Ngue016019.1
Basic Information
- Insect
- Nephrotoma guestfalica
- Gene Symbol
- -
- Assembly
- GCA_963691935.1
- Location
- OY829913.1:233519362-233521605[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.3e-10 5.7e-07 31.0 0.0 1 35 9 44 9 48 0.94
Sequence Information
- Coding Sequence
- atgccaAGAAAAAGAGACACATTTGATGAAGACCAGGTTCAAAAGGCATTAGGTGAAATAAGAAACGGCCAAATTAGTAAAAAGGCGGCagccaaaaaatataatgtgCCTAGATCAACGCTTCAATTTCGATTAGGGTCGAATTTTTCTAAAGCTCGACCAGGCCCACCAACAATCCTAACCGAAGAAGAAGAGCAACGCATTGTTGAATGGATAAAAATTTCCCAACAAAAAGGATTCCCGAAGCGAAACGAGGATGTTGTTACAGCAGTAAAAGAATTTTTAGAAGATACTGATAGACCTCATCCATTTGGTGAGAACAAAATTCCAGGAAAGGGTTGGTTTAAAGCTTTTTTAAAACGACATCCGTCTCTATCGCTTCGAGCTAGTGATCCTGTTTCGGCAGCAAGTGCTACAGTTGCTGCTTCAGATATTTATTCATGGTTCGATACAAtggaaaaatttttaaaagatcacGACTATTATGATATATTAGAAGATCCAACACGAAATTTTAACGGAGACGAgacgaattttcttttatgtccTAAAACTAAAAACGTTTTAGCAGCGAAAATCTCTCGAAATGTATACGAAATTGACAAAGGATTGGCCAAAGCAAATTTAACGGTCATGTTTACCTTTTCTGCTGCCGGAGTGTTAACCCCTCCCATGATAATCTACCCATATAAAAGAATACCGGAAGAAATTCGTAAATCGTTGCCTAAAGGATGGGGAATTGGAATCAGTGACAACGGGTGGATGACAAAACAAGtattttacgagtatatatcaaAGGTTTTGCATCCGTATTTAGTGCAGCTGGGCACTAAATTTCccgttgtatattttgttgacgGGCACTCAACCCATCTAACGTTACCTGTGAGTGAGCTGTGTGTGAAActgcaaattattttagtagCATTATATGCAAATGCTACTAGAATATTACAGCCCGCTGATGTGGCAGCATTCAAACCGTTGAAAACGTCTTGGAATCGGAAAGTTTTAGAATGGCGACGTAATAATCCTAGTGCCTCTttaactaaagaaaaatttgcaCCATTATTATATGATGTTGTGGAAAGTACTGTGTGTAAAGAGACTATTCAGAAGGGCTTCAAGGCATGTGGCCTCTTTCCATTCaacaaatttgcaattaatttatcgaaatgCTTAGGAAGATCATCGTCTAAATCTACATATGGCAGTCGACTAAATCCCAAATCACCGGACGATGGATTTCAAACGCTGTGTGAAGCAATCGGTgataacaaaattcaactattCGAAAGTATCGACCGAGGTGAACTTCAAAAAGATAGCTTCAACGAAGATTTcgtaattttatatgatttatataaCAAGTTTAAATccaaaggaaaattaaatctaaGTGTTTCAGATAAATCAACACAAACGCACGTTGAATATCAGAATATAGAAACCTCAGAAATCGACATCAGTGCCAtcgatgaattttttataattcaagaTCCGCCAAGTACGGCAAAtgacgaaattataaatatttccaatgTCATTCCCATTCAACAGTCCACAGAACTACAAACAGTGACATACATAACTGTTCCTCCGCAAAGCACTACGGCAATAATTGATGATTTCCTATCTTGGCCAGAGACTCCCTTGAGAAAAGGTTGCAAAAcggacaaaattaaaaagccaTATGTGGTTACTTCTCCGCTGTGGATAAAACAAGCACAACTAAAAAAAgatcaacttaaaaaaattgaattagaaaAGGAAAACCGCAAAATTTTACGAATGAAAAATAAGGAGTTAAAAAATGCAGAAAAACTGAATAAATCGAAACGCCCACGCAAAGAAAATGCAAAGTCTAAGAAGTTTTCAAGTACGACAACTTCTACAAATGTGTTAGTTGCAATTGAAAATACAGGGCAGAGTAGTATTGAAGGAAATAGAGACATGCGAATCTACGAACAGTTAAATTGTCatagcaataataaaaattgtttagttgaGACTCCCGATTTTAATGAACCTATTGTAGAACCAATTATCAAACTCAATGAAATGGATGAATCTTCCGGAAGATATCAATCTACTACAAATACGACGACGTCAGGCAGCGTGGAGCCAATCAAAGACACTCTGCAAAAGTTTGAGCAGATACAGAAACTACAAAGCATCAAAAACGATCAAAATGAACTTCTAGGAAAACGATACCTCATGAAACCATTGTCAAACCGTTcctaa
- Protein Sequence
- MPRKRDTFDEDQVQKALGEIRNGQISKKAAAKKYNVPRSTLQFRLGSNFSKARPGPPTILTEEEEQRIVEWIKISQQKGFPKRNEDVVTAVKEFLEDTDRPHPFGENKIPGKGWFKAFLKRHPSLSLRASDPVSAASATVAASDIYSWFDTMEKFLKDHDYYDILEDPTRNFNGDETNFLLCPKTKNVLAAKISRNVYEIDKGLAKANLTVMFTFSAAGVLTPPMIIYPYKRIPEEIRKSLPKGWGIGISDNGWMTKQVFYEYISKVLHPYLVQLGTKFPVVYFVDGHSTHLTLPVSELCVKLQIILVALYANATRILQPADVAAFKPLKTSWNRKVLEWRRNNPSASLTKEKFAPLLYDVVESTVCKETIQKGFKACGLFPFNKFAINLSKCLGRSSSKSTYGSRLNPKSPDDGFQTLCEAIGDNKIQLFESIDRGELQKDSFNEDFVILYDLYNKFKSKGKLNLSVSDKSTQTHVEYQNIETSEIDISAIDEFFIIQDPPSTANDEIINISNVIPIQQSTELQTVTYITVPPQSTTAIIDDFLSWPETPLRKGCKTDKIKKPYVVTSPLWIKQAQLKKDQLKKIELEKENRKILRMKNKELKNAEKLNKSKRPRKENAKSKKFSSTTTSTNVLVAIENTGQSSIEGNRDMRIYEQLNCHSNNKNCLVETPDFNEPIVEPIIKLNEMDESSGRYQSTTNTTTSGSVEPIKDTLQKFEQIQKLQSIKNDQNELLGKRYLMKPLSNRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01054238;
- 90% Identity
- iTF_01054253; iTF_01054238; iTF_01054228; iTF_01054229;
- 80% Identity
- -