Ngue052423.1
Basic Information
- Insect
- Nephrotoma guestfalica
- Gene Symbol
- lolal
- Assembly
- GCA_963691935.1
- Location
- OY829915.1:149754838-149769691[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-17 5.5e-14 53.5 0.0 2 45 479 523 478 523 0.95
Sequence Information
- Coding Sequence
- atgtcagtacaacaattttgtttgcgTTGGAATAATCACCAACCCAATTTTATATCAGTGTTTTCAACACTTCTGCACAATGAAACGCTTGTTGATGTAACCCTTGCCGCAGAAGGTAGACAACTCCAAGCTCATAAAGTTGTGTTATCGGCGTGTAGTTCATATTTTCAAACACTTTTTACAACAAATCCATGTCAACATCCAATTGTTATATTAAAAGATGTAcaatatattcatttaaaaactatGGTAGATTTTATGTATTATGGTGAAGTAAATGTATCACAGGAACAATTACCACATATATTAAAAACAGCTGAAATGCTTAAAATTAAAGGTTTAGCTGAAATGCCCGATGCAACTTCATTAACAAAATCCGAAAGCAAATCATCATCATCCGATCATATAGAACAAATAACTGGTGGTACCGTTGGTAATGAATCAATTTGGGGTAGTACAGAATCTCAGCAGTTTCATCATCAACAACAAAGACGTACACCGTCACCTGCCTCGCTGTCACCGGCTACAAGAAGAAAGCGTCTACGAAAATCGTCAACAggTTCTGGTACCTTGTCAACAGAACGAACATCGGAAGAACAAAGTAGTATTGACGGtggatcaaatttaaatattggtcAAATGGATCCAATGACAACATTTGTCCCCAGTTCGGGaaatatttcatcaaatataaataattcaagAATATTAAAAGAAACCTCAAGTACAGAAACGGAACATCCACATCAAGAATCCTCTCAGGAAAGTGTTGAAGAATCAATGCATCATAGCTCTTCCGCAGTTatgaaaactgatgaTGATATGGGAAGTGTCTCACATACAATGCCACTAGATATAGCCGGGTCTACATCAAATACTGgccaacagcagcagcagcagcaacaacaaccagcGGTTAGTTGTCCCCAGCCGCAACCAgGTGTGCAATGGACATTAATTGATTCAAACTATCCAAGATTTTATCAGCCGGGTTTGGGAATGCAAACGCCGACTGGGCAAAATAATACGGATGCACATCAGAACAACAGTAAtaaccacaataataataatagcaatagtaacaatacaaataataataataataatagtaataataatccaaatgcTGGAAATACTCATCCTAATACAACAAATGAAGAAAATACCGGAGTGCAAACACTACAGTATCAACAAAATCCAGCATATTCACCTCAAATAATTTCAGTGAATCCAAATAGTCTAATGAACAGTTATCAATCGAGTTTATCTAATCCTACGTCTCCATCGCAGGAAAATGAATCAATGGTACAATCTGTCTATAGTCAGGGACCAACGCCTGCCCAATCACCGATTCAACAAATCGGGAATCAAGGGAGTAATTCAAGTGGTTCACAAATGCCGGTTAAACGAAAACGAAGTGTTAATCCACAAGgcgatgaaaattttatacgtGCTCTGGAAGCGGTACGCTATGGTGGTATTGGTTTTTGTAAAGCAGCTAGACTATACGGGGTTAATAATAGAACTTTATGGTTAGAATATAAGAAACGTGGCTATCCCATCAGTCGCCCTAGTATTAAGAGTAGAATTAAACTCGAACCAAATATGACTCCACCTCCACCAACCACACCAAATAATGAGGAAAATACAATGGAAAATTATGATCAGCTAACACCAACTGCTATAAATATGGCCACGGTGCCATCTACCACTGAACCGACTACACCATTAATGTGTCCACCGCATGCACATCCAATGGGTGTTATGAGTTTTCTGGATTCGCGACATGTTGAATTCCCAACCGCAATCCATTCAATGTCACGTCAAAGATATGCTGATCCATCAGTAAATGTAAATCCCACAGCAATGAATTTACAAGgacttaattttaattccatgTAA
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVFSTLLHNETLVDVTLAAEGRQLQAHKVVLSACSSYFQTLFTTNPCQHPIVILKDVQYIHLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPDATSLTKSESKSSSSDHIEQITGGTVGNESIWGSTESQQFHHQQQRRTPSPASLSPATRRKRLRKSSTGSGTLSTERTSEEQSSIDGGSNLNIGQMDPMTTFVPSSGNISSNINNSRILKETSSTETEHPHQESSQESVEESMHHSSSAVMKTDDDMGSVSHTMPLDIAGSTSNTGQQQQQQQQQPAVSCPQPQPGVQWTLIDSNYPRFYQPGLGMQTPTGQNNTDAHQNNSNNHNNNNSNSNNTNNNNNNSNNNPNAGNTHPNTTNEENTGVQTLQYQQNPAYSPQIISVNPNSLMNSYQSSLSNPTSPSQENESMVQSVYSQGPTPAQSPIQQIGNQGSNSSGSQMPVKRKRSVNPQGDENFIRALEAVRYGGIGFCKAARLYGVNNRTLWLEYKKRGYPISRPSIKSRIKLEPNMTPPPPTTPNNEENTMENYDQLTPTAINMATVPSTTEPTTPLMCPPHAHPMGVMSFLDSRHVEFPTAIHSMSRQRYADPSVNVNPTAMNLQGLNFNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458525;
- 90% Identity
- iTF_01054447; iTF_01456146; iTF_01455569; iTF_01454964; iTF_01454772; iTF_01460053; iTF_01459376; iTF_01457497; iTF_01457250; iTF_01458525; iTF_01458255;
- 80% Identity
- iTF_01054447;