Basic Information

Insect: Tipula vernalis
Gene Symbol: lolal
Assembly: GCA_958295665.1
Location: OY282560.1:153239851-153243496[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.8e-16 1.6e-13 53.4 0.0 2 45 484 528 483 528 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.8e-16	1.6e-13	53.4	0.0	2	45	484	528	483	528	0.95

Sequence Information

Coding Sequence: atgtcagtacaacaattttgtttgcgTTGGAATAATCACCAACCCAATTTTATATCAGTGTTTTCAACACTTCTGCACAATGAAACGCTTGTTGATGTAACCCTTGCCGCAGAAGGCAGACAACTCCAAGCTCATAAAGTTGTGTTATCCGCGTGTAGTTCATATTTTCAAACACTTTTTACAACAAATCCATGTCAACATCCAATTGTTATATTAAAAGATGTACaatatattcatttaaaaactaTGGTAGATTTTATGTATTATGGTGAAGTAAATGTATCACAGGAACAATTACCACATATATTAAAAACAGCTGAAATGCTTAAAATTAAAGGTTTAGCTGAAATGCCCGATGCAACTTCATTAACAAAATCCGAAAGTAAATCATCATCATCCGATCATATAGAACAAATCACTGGTGGTACAGTTGGTAATGAATCAATTTGGGGTAGTACAGAATCTCAGCAGTTTCATCATCAACAACAAAGGCGTACACCGTCACCTGCCTCGTTGTCACCGTCTACAAGAAGAAAACGTCTACGAAAATCGTCAACAGGTTCTGGTACCTTGTCAACAGAACGAACATCCGAAGAACAAAGTAGTATTGACGGTgggtcaaatttaaatattggtcaAATGGATCCAATGACTACATTTGTACCTAGTTCAGGAAATATTAcgtcaaatataaataattcaagaaTATTAAAGGAAACCTCAAGTATAGAAACCGAACACCCTCATCAAGAATCATCTCAAGAAAGTGTTGAAGAATCAATGCATCACAGCTCATCATCAGCAGTTATGaaaactgaTGATGACATGGGAAATGTATCACATACGATGCCATTAGATATAGCCACATCAAATACtggtcaacaacaacaacagcagcagcagcagcaacaacaaccaGCAGTTAGTTGCCCTCAACCGCAACCagGTGTGCAATGGACATTAATTGATTCAAACTATCCAAGATTTTATCAGCCGGGTTTGGGAATGCAAACGCCGACTGGGCAAAATAATTCGGATGCACATCAGAACAACAGTAATAaccacaacaataataataatagcaatagtaataatacaaataacaataataataacaataatagtaataataatccTAATTCTGGAAATAGTACTCATAATTCAACAAATGACGAAAATACCGGAGTTCAAACATTACAGTACCAACAGAATCCAGCATATTCACCTCAAATAATATCAGTGAATCCAAATAATCTAATGAATAGTTATCAGTCAAGTTTATCAACGCCAACATCTCCATCGCAGGAAAATGAATCAATGGTTCAGTCGGTATATAGTCAGGGACCAACACCGGCTCAATCCCCAATTCAGCAAATAGGAAATCAAAGTAGTAATTCGAGTGGTTCGCAAATGCCAGTAAAAAGAAAGCGTAGTGTTAATCCGCAGGgcgatgaaaattttatacgtgCTCTTGAAGCTGTACGCTATGGAGGGATTGGTTTTTGTAAAGCAGCTAGATTGTATGGAGTTAATAATAGGACCCTATGGTTAGAATATAAAAAGCGTGGGTATCCAATCAGTCGTCCTAGTATTAAGAGTAGAATAAAACTAGAGCCTAATATGACCCCACCGCCACCCACAACACCAAATAATGAAGAAAATACAATGGAAAATTATGATCAACTAACACCGACCGCTATAAATATGGCAACCGTACCATCATCTACTGAATCATCCACACCACTAATGTGTCCACCGCCGCATGGCCATCCAATGAGTGTAATGAGTTTCCTCGATACGCGGCATGTTGAATTTCCAACCGGGATACATCAAATGTCACGTCAAAGATATGCTGATCCATCAGTAAATGTAAACCCCACAGCAATGAATTTACAAGGACTTAATTTTAACTCCATGTAA
Protein Sequence: MSVQQFCLRWNNHQPNFISVFSTLLHNETLVDVTLAAEGRQLQAHKVVLSACSSYFQTLFTTNPCQHPIVILKDVQYIHLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPDATSLTKSESKSSSSDHIEQITGGTVGNESIWGSTESQQFHHQQQRRTPSPASLSPSTRRKRLRKSSTGSGTLSTERTSEEQSSIDGGSNLNIGQMDPMTTFVPSSGNITSNINNSRILKETSSIETEHPHQESSQESVEESMHHSSSSAVMKTDDDMGNVSHTMPLDIATSNTGQQQQQQQQQQQQPAVSCPQPQPGVQWTLIDSNYPRFYQPGLGMQTPTGQNNSDAHQNNSNNHNNNNNSNSNNTNNNNNNNNSNNNPNSGNSTHNSTNDENTGVQTLQYQQNPAYSPQIISVNPNNLMNSYQSSLSTPTSPSQENESMVQSVYSQGPTPAQSPIQQIGNQSSNSSGSQMPVKRKRSVNPQGDENFIRALEAVRYGGIGFCKAARLYGVNNRTLWLEYKKRGYPISRPSIKSRIKLEPNMTPPPPTTPNNEENTMENYDQLTPTAINMATVPSSTESSTPLMCPPPHGHPMSVMSFLDTRHVEFPTGIHQMSRQRYADPSVNVNPTAMNLQGLNFNSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01458525;
90% Identity: iTF_01054224;
80% Identity: iTF_01460053;