Napp043994.1
Basic Information
- Insect
- Nephrotoma appendiculata
- Gene Symbol
- zfy1
- Assembly
- GCA_947310385.1
- Location
- OX371224.1:183235614-183238261[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.1e-05 0.018 17.6 0.9 1 23 117 139 117 139 0.97 2 20 0.0022 0.48 13.1 4.3 1 23 145 167 145 167 0.91 3 20 0.0012 0.27 13.8 4.6 1 23 179 201 179 201 0.97 4 20 9.1 2e+03 1.7 0.6 1 21 207 227 207 230 0.75 5 20 1.4e-07 3.1e-05 26.2 0.8 3 23 255 275 254 275 0.98 6 20 4.9e-06 0.0011 21.4 3.1 1 23 281 303 281 303 0.98 7 20 0.00014 0.031 16.8 0.9 1 23 309 332 309 332 0.95 8 20 0.00094 0.21 14.2 1.0 1 23 344 367 344 367 0.94 9 20 9e-07 0.0002 23.7 0.3 2 23 440 461 439 461 0.96 10 20 0.00088 0.2 14.3 3.0 1 23 467 489 467 489 0.99 11 20 0.086 19 8.0 0.4 1 21 496 516 496 519 0.89 12 20 0.0019 0.41 13.3 0.6 2 23 527 548 526 548 0.95 13 20 0.00079 0.18 14.4 7.2 1 23 586 608 586 608 0.98 14 20 0.0045 1 12.1 0.9 3 23 616 636 614 636 0.97 15 20 3.6e-05 0.008 18.7 1.6 1 23 642 664 642 664 0.97 16 20 1.7e-05 0.0038 19.7 2.7 1 23 670 692 670 692 0.98 17 20 0.0002 0.045 16.3 1.8 2 23 722 743 721 743 0.97 18 20 0.00012 0.026 17.0 1.7 1 23 749 771 749 771 0.97 19 20 0.00054 0.12 15.0 2.6 1 23 778 800 778 800 0.98 20 20 0.083 18 8.1 3.8 1 23 806 828 806 828 0.95
Sequence Information
- Coding Sequence
- ATGGATTCACAATTATACATTTTATTTAATAATAACGTGCTAACACCAATTGATCAATCGAATATATGTTATGTAATTGCGTCCGGACTGCTAGTGCCAATATCCAATGACATTAATTCTATAAACCCTGTTGAAGAACCTTTAGTAACTTCCGAGGACTTTATTTGCAATTATGATGAACAAATAATACCAATCAACGAAGAAGAATTTTGTACTTCCAGTTTATCAATACCAATTGATGATGGGTTTAACGAGATCTTCATGGAATATAATGAGGTTGACAGTACTAGGCTTCCAAATGAACTATATATAAATCCAACATCTGACCCCCCAAATACTGGAAACTCGTATGCGTGTGAACACTGTGGAATCAAATTTCCACAAATAAAACTGTTGAATCGGCATAAGATAACACATATTTACGAGAAACCGTTTAAATGCAACCAATGTCATGAGAGTTTTAATTTTTCGGTCAATTTAAAAGTGCACAATACATTTCATCAAGATTCATCGGTCAATTCCGGCAGACCAAAACATGAGTGCTGTGTTTGCAACAAAATATTTCGCCGTTTTTCTAGCTTACGCGGGCACCTCAAAGGGCATTCGGTCTCGGATTATTTTAATTGCGATCTTTGCAATGAAATATTTTTGGCAAAAACATTTTACGAAAATCATTTGGATAATTACCATAAGAAGGAAGACAAGGAAAGTAAAATTGTTAAATTACCTAGTGGTGGTAACGTTGCCAACATTGAACGAGACTGTAAATTATGTGGCAAATCGTTTAAAAAACCCAGTATGCTGGTTCGCCATATGCGAGTGCATAATGGTGAGAAACCATTTAAATGCAGTACATGCGGTAGACAATTTTCTCAAAAAAATTCCCTCAAAACGCATTTGCTTCGACACACAGGAAGAAAACCTTTCGCTTGTACGTTATGTTCAATGCGATTCACGCAGAAAGGAAATCTAAAGATCCACAAGGAAAAAGTCCATAACAAATTCAGCTCGAATACGGAGGACACGAAATATCCCTGCAATCAATGCTCATGCGTATTTCGTAAAATCGGCTCACTCAATCGGCATATCACGGAAGTTCATAGCGCAAATAATCGAAAAGGGGTGACGTCTAATAGAGAAATTAATTTCAACGAGATTATTTCACAAATCAATGATCTAAAACAAGCACCTCCTACTCCTGAAACTTCGGAACAACAAGGAGATGGTATTATTCAGTTAGCCGATCGACTAGAAAACGGTATTTTAATTCATCGTAAGGTACAACATTTGGGCACCGACCGGGGTAAAAATATGTTAAGTTGCCTAAAATGTGGAAAACTTTTTACTCGACCATCGGACTTGCTACGACACATTCGTGTGCACACCAAGGAGAAGCCGTATGAATGCTATCTATGCAAACGTCGTTTTTCCGTTCAAAGGACTCTCTCACTTCACTACAAAACACATGAAAGCGCTTTGCGCAAATTTTCTTGTAGTGCCTGCAGTAAAAATTTTCGTGATATTACCACCCTGTTAGCGCACGGGACTGAATACCATCAAAATTCTTGTGACTACTTGCAATGTTTTCGATGCAAATTGAGTTTCTCAAATGCGGAACAACTTGAGATCCATTCGAAGGAACATAATCGTCGACTTGCTGCAATGAATCGCAAATCTTACAACACAAGTATCCAAATGCAGGATCCGATTGTGATTAATCAGGAAATAAAACACGCAGATACCCGAAGACGGTTATATAAATGTTACGACTGTTCAAAGAGTTTCATAAAATTATGCCACCTTAAGCAGCATCAGCTGTCGCATACGGGCGACCGACCGTTCGGTTGTGATAAATGTATAAAAACATTTAAATCTCGGAATGCCTTGACCATCCATACCCGAGGCCATTCAAATCTAAAGCCATACAAATGCGAGACGTGCGATGAACATTTTGTATCAAGGCCAAATTTGAAGCGACACAGCTTGATTCATTCCGAGGTACGCAATTTTATATGCCCTTATTGTCAAAAACCGTTTAAATCAAATTCAGATTGCCGCAAACATATTCGAATACATCAAAAAGAAATGGTCTCGCCTCCGGTTGAGCTCGATGTGTGCCCGAACGCACATGAATGCATTAGCCAAGTACAACCCAGCTTCAAGACATGTCGATACTGTAATCGTTATTTCAAAAAACCAATCGACCTTCGGCGGCACGAAAGGATACATACCGGCGAACGACCGTTTAATTGTGATAAATGCGATAAATCGTTTTCCTTGGCGTCCACTTTGAAGTTCCATCAAAGAATTCATGATGAATTCAAGCGAATGTTCACATGTCACGTATGTTCTAATAAATACGCCACAAAGGGTAGCCTTAAAGTGCATAAACGAATTCACACCGGCGAAAAGCCATTTAAATGCAGATTCTGTGACATAAAATTTAGGACAAACGGACATCGCAGCGTTCATGAATCAAATCACATAAAAATCGCTTACGAACGTGGCATAGACCCGAAAGATGTTAAAAATATGCGATCATCGAAATTCGAGAGTATCGTCGAGGATTTTACGTTTAATTAA
- Protein Sequence
- MDSQLYILFNNNVLTPIDQSNICYVIASGLLVPISNDINSINPVEEPLVTSEDFICNYDEQIIPINEEEFCTSSLSIPIDDGFNEIFMEYNEVDSTRLPNELYINPTSDPPNTGNSYACEHCGIKFPQIKLLNRHKITHIYEKPFKCNQCHESFNFSVNLKVHNTFHQDSSVNSGRPKHECCVCNKIFRRFSSLRGHLKGHSVSDYFNCDLCNEIFLAKTFYENHLDNYHKKEDKESKIVKLPSGGNVANIERDCKLCGKSFKKPSMLVRHMRVHNGEKPFKCSTCGRQFSQKNSLKTHLLRHTGRKPFACTLCSMRFTQKGNLKIHKEKVHNKFSSNTEDTKYPCNQCSCVFRKIGSLNRHITEVHSANNRKGVTSNREINFNEIISQINDLKQAPPTPETSEQQGDGIIQLADRLENGILIHRKVQHLGTDRGKNMLSCLKCGKLFTRPSDLLRHIRVHTKEKPYECYLCKRRFSVQRTLSLHYKTHESALRKFSCSACSKNFRDITTLLAHGTEYHQNSCDYLQCFRCKLSFSNAEQLEIHSKEHNRRLAAMNRKSYNTSIQMQDPIVINQEIKHADTRRRLYKCYDCSKSFIKLCHLKQHQLSHTGDRPFGCDKCIKTFKSRNALTIHTRGHSNLKPYKCETCDEHFVSRPNLKRHSLIHSEVRNFICPYCQKPFKSNSDCRKHIRIHQKEMVSPPVELDVCPNAHECISQVQPSFKTCRYCNRYFKKPIDLRRHERIHTGERPFNCDKCDKSFSLASTLKFHQRIHDEFKRMFTCHVCSNKYATKGSLKVHKRIHTGEKPFKCRFCDIKFRTNGHRSVHESNHIKIAYERGIDPKDVKNMRSSKFESIVEDFTFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01054580; iTF_01053657; iTF_01053656;
- 90% Identity
- iTF_01053657;
- 80% Identity
- -