Basic Information

Insect: Neoneuromus ignobilis
Gene Symbol: Sall1
Assembly: GCA_029203775.1
Location: CP092087.1:19321641-19327188[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00011 1.1 10.2 0.0 21 44 147 170 142 178 0.89

2 13 0.14 1.5e+03 0.2 0.0 21 52 175 206 171 208 0.84

3 13 0.025 2.7e+02 2.6 0.0 21 45 203 227 195 233 0.88

4 13 0.6 6.5e+03 -1.8 0.0 21 40 315 334 309 342 0.75

5 13 0.00075 8.1 7.5 0.1 21 46 343 368 338 374 0.90

6 13 0.12 1.3e+03 0.4 0.2 21 30 377 386 373 388 0.89

7 13 0.023 2.5e+02 2.7 0.3 21 44 537 560 529 569 0.88

8 13 0.13 1.4e+03 0.3 0.0 21 45 565 589 561 593 0.87

9 13 0.00012 1.3 10.0 0.1 21 45 593 617 585 621 0.89

10 13 0.0062 67 4.5 0.0 21 44 682 705 677 713 0.88

11 13 0.28 3e+03 -0.8 0.0 26 47 743 764 740 771 0.81

12 13 0.43 4.6e+03 -1.4 0.0 21 43 766 788 761 794 0.74

13 13 0.26 2.8e+03 -0.7 0.0 21 43 794 816 788 818 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00011	1.1	10.2	0.0	21	44	147	170	142	178	0.89
2	13	0.14	1.5e+03	0.2	0.0	21	52	175	206	171	208	0.84
3	13	0.025	2.7e+02	2.6	0.0	21	45	203	227	195	233	0.88
4	13	0.6	6.5e+03	-1.8	0.0	21	40	315	334	309	342	0.75
5	13	0.00075	8.1	7.5	0.1	21	46	343	368	338	374	0.90
6	13	0.12	1.3e+03	0.4	0.2	21	30	377	386	373	388	0.89
7	13	0.023	2.5e+02	2.7	0.3	21	44	537	560	529	569	0.88
8	13	0.13	1.4e+03	0.3	0.0	21	45	565	589	561	593	0.87
9	13	0.00012	1.3	10.0	0.1	21	45	593	617	585	621	0.89
10	13	0.0062	67	4.5	0.0	21	44	682	705	677	713	0.88
11	13	0.28	3e+03	-0.8	0.0	26	47	743	764	740	771	0.81
12	13	0.43	4.6e+03	-1.4	0.0	21	43	766	788	761	794	0.74
13	13	0.26	2.8e+03	-0.7	0.0	21	43	794	816	788	818	0.81

Sequence Information

Coding Sequence: ATGGATATTTGCGATTTAAAACCATTGTTTAACGAAAACTTGATTAACTCTGAAGAATGTTCTGTAATTTCAGATATACTAATGGAATGGTGTTCTGTACAAATTTTCCAGAATGATGGTTTGCCATCTCATATCTGTTCTAAATGTCTAAAACAAATGAATGAAGCATATTTGTTTCGTCAGCAGTGTATTAAATCAGATTCTATTCTTCGTTCATTTGTAGAAAAACCAGAAATTACTGATGTTAAAATAGAATTAGCAAGCACTTCTCCAGAATATTTAACTCATAGTGATATAGAAATAAaaatattttcaacagaaaTTGAGTTAAATGTTCATATGAAAACTAAAAAACATCCATATAGgagaattttatgtaatatttgtgCAAAACCTTTAAGTTTTCGGCATATTGATGTTCATATGCGAACACATACGAAAGAAAAACCTTATACTTGTGATTTTTGTGGAGCGCAATTTAGTGTGAATGGTAATCTTCGTCGACATATAATGACACATACTGGTGAACGCCCTCACAAATGTGATGTTTGTGGTAAGGGATTTATACAGGCAATTTCTTTAGAAGAACATATGCGTGTTCATACAGGAGAAAAACCTTTTGTGTGCAATTATTGCGGAAAAGCCTataaacaatcaaaacaatttaaGGTGCATGTAAAGAAACATGTGCAACCTGATGTAGGTAAATCTGAAATACAAAAAGAACGTAAGAGAAATGATGTTTCTCGACgtctaaaaattattcattctgATGAAACGGAACGATCACATGTGTGTGATATTTGTGATAGAGGGTttacaacaaaaacaatattatctGCACATTTACTTACTCATGGCGATAAAAAGTTCCTGTGTAGTGATTGTGGTAAAggatttgttacaaaaattggATTACAGTCTCATAGTAAAATTCATACTGGAGAGAAACCTTATTCTTGTAATGTGTGTGGAAAAACATTTGCTCATACAGCATCATTAAAAGttcacacatatgtacatacaggTGAAAAACCTTattcttgtaaaatatgtgataaaaGATTTTCACAAAGTAGTCATTTAAGAACTCATGGAAATTTAACTGTGCACATGAGAATTCATATGGGAGAAAGACCTTTTACTTGTAGTATTTGTGGAAAAGAAGGAGCATTAATACCAATTTATTCTTTAGGTGATGATACAAATGAATCGATTCAAATAGCTGAAATGTTTATGGCATGTACTTCACTaatggtaGTAAAGGATGATGGATTACCATCTAATATGTGTGAAACATGCGTAAATCAAATTAATCAagcttatttatttaagaaacaaTCTGAAAGAAGTGATATTGCTTTACGGTACTATTCAGATATAAAAGAATCTCATACATTACctgaaatagaaattaaagaAGATCTAGGAACTGAAATTCAAAATGATACAGATATACAAGGTACAGATGATAATGTAAGCGTTTATTTAGAATCCGAAGATGATGTAGACTTAATAACACGAacagaaaatgataaaaaagagaaaatagaCACTCAAATTATTTCTGAAGAAGTTCATTTACGAAGTCATATGCTTGTACATAGTGAAGAAAAACCATTTCAATGTCATGTATGTGAACGAAGATTTAACTCAAAACCTAATTTAAAACGACATGTAATGACTCATACAGGAGAAAGACCACATCGGTGTGATGTTTGTGGAAAAGggTTTATTCAGTCAGTTACACTTACTGATCATATGAGAGTTCATACAAAAGAAACTCCATATGTTTGTAGTCATTGTGGAAGAGCGTTTAAACAATCTGGGGAGTTAAGacgtcatttaaaaaaacatacagatCCAGAAAATGCAGAAAATAAAAGTCCAAGAAAACGTCGGCCACCAGCACCAAGAGATCCAAATAAACCTCCTCCAGAAAGAAAATATCGACCTTCtctagaaaaaacatttttatgttgcAATTGTGGAAAATGTTTTGCAAGTAACACGTTATTAGAAATACATAACAGAATTCATACAGGAGAAAAACCCTATACTTGTACTGTTTGTAGTAAATCATTCTCACAAGTTAGTACATTAAAGACTCATATTTTAGTTCATACaggagaaaaaaaatatgattgttatgtgtgtaaaaaatcatttagacATCGTGTAGCACTTAAACagcatattttaattcatatggGTATTAGAAAATATGCCTGTACATTTTGTCCTAAAACATTTACACAAAGTAGTCAGTTGAATTATCATCTAAGAACACATACAGGAGAAAAACCATATTCTTGTGCTGTGTGTGGAAAAAGTTTTGCTCTTAAAGGTAATCTTACAGTTCATATTAGAACTCATACAGGTGAAACTCCATATATATGTTCCATTTGTGGTAAAGGTTTTTATGATTCTAGTAGTatgaaaaaacatcaaaaagGTCATGTGGATAATAGATAA
Protein Sequence: MDICDLKPLFNENLINSEECSVISDILMEWCSVQIFQNDGLPSHICSKCLKQMNEAYLFRQQCIKSDSILRSFVEKPEITDVKIELASTSPEYLTHSDIEIKIFSTEIELNVHMKTKKHPYRRILCNICAKPLSFRHIDVHMRTHTKEKPYTCDFCGAQFSVNGNLRRHIMTHTGERPHKCDVCGKGFIQAISLEEHMRVHTGEKPFVCNYCGKAYKQSKQFKVHVKKHVQPDVGKSEIQKERKRNDVSRRLKIIHSDETERSHVCDICDRGFTTKTILSAHLLTHGDKKFLCSDCGKGFVTKIGLQSHSKIHTGEKPYSCNVCGKTFAHTASLKVHTYVHTGEKPYSCKICDKRFSQSSHLRTHGNLTVHMRIHMGERPFTCSICGKEGALIPIYSLGDDTNESIQIAEMFMACTSLMVVKDDGLPSNMCETCVNQINQAYLFKKQSERSDIALRYYSDIKESHTLPEIEIKEDLGTEIQNDTDIQGTDDNVSVYLESEDDVDLITRTENDKKEKIDTQIISEEVHLRSHMLVHSEEKPFQCHVCERRFNSKPNLKRHVMTHTGERPHRCDVCGKGFIQSVTLTDHMRVHTKETPYVCSHCGRAFKQSGELRRHLKKHTDPENAENKSPRKRRPPAPRDPNKPPPERKYRPSLEKTFLCCNCGKCFASNTLLEIHNRIHTGEKPYTCTVCSKSFSQVSTLKTHILVHTGEKKYDCYVCKKSFRHRVALKQHILIHMGIRKYACTFCPKTFTQSSQLNYHLRTHTGEKPYSCAVCGKSFALKGNLTVHIRTHTGETPYICSICGKGFYDSSSMKKHQKGHVDNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01050522; iTF_00004805;
90% Identity: iTF_01050522;
80% Identity: iTF_01050522;