Nign000809.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neoneuromus ignobilis
Gene Symbol
Sall1
Assembly
GCA_029203775.1
Location
CP092087.1:19321641-19327188[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.92 75 4.9 0.2 8 23 102 119 102 119 0.89
2 19 4.9 4e+02 2.6 1.0 3 23 126 145 125 145 0.92
3 19 1.7e-06 0.00014 23.0 0.3 1 23 151 173 151 173 0.99
4 19 1.3e-06 0.00011 23.3 0.2 1 23 179 201 179 201 0.98
5 19 3.1e-06 0.00025 22.1 2.2 1 23 207 229 207 229 0.98
6 19 0.00034 0.028 15.7 0.6 1 23 264 286 264 286 0.97
7 19 8.2e-05 0.0067 17.6 0.2 1 23 291 313 291 313 0.95
8 19 1e-05 0.00085 20.5 1.2 1 23 319 341 319 341 0.97
9 19 0.00022 0.018 16.3 8.4 1 21 347 367 347 375 0.92
10 19 2.2 1.8e+02 3.7 0.4 1 8 381 388 381 390 0.92
11 19 1.9e-06 0.00015 22.8 3.2 1 23 541 563 541 563 0.99
12 19 8.3e-07 6.8e-05 23.9 0.6 1 23 569 591 569 591 0.98
13 19 1.4e-07 1.1e-05 26.4 2.3 1 23 597 619 597 619 0.98
14 19 0.0007 0.057 14.7 3.6 1 23 658 680 658 680 0.95
15 19 1.6e-06 0.00013 23.1 0.9 1 23 686 708 686 708 0.98
16 19 2.3e-05 0.0019 19.4 2.0 1 23 714 736 714 736 0.97
17 19 3e-07 2.4e-05 25.3 2.0 1 23 742 764 742 764 0.98
18 19 2.2e-07 1.8e-05 25.7 0.1 1 23 770 792 770 792 0.99
19 19 1.9e-06 0.00016 22.8 0.7 1 23 798 820 798 820 0.97

Sequence Information

Coding Sequence
ATGGATATTTGCGATTTAAAACCATTGTTTAACGAAAACTTGATTAACTCTGAAGAATGTTCTGTAATTTCAGATATACTAATGGAATGGTGTTCTGTACAAATTTTCCAGAATGATGGTTTGCCATCTCATATCTGTTCTAAATGTCTAAAACAAATGAATGAAGCATATTTGTTTCGTCAGCAGTGTATTAAATCAGATTCTATTCTTCGTTCATTTGTAGAAAAACCAGAAATTACTGATGTTAAAATAGAATTAGCAAGCACTTCTCCAGAATATTTAACTCATAGTGATATAGAAATAAaaatattttcaacagaaaTTGAGTTAAATGTTCATATGAAAACTAAAAAACATCCATATAGgagaattttatgtaatatttgtgCAAAACCTTTAAGTTTTCGGCATATTGATGTTCATATGCGAACACATACGAAAGAAAAACCTTATACTTGTGATTTTTGTGGAGCGCAATTTAGTGTGAATGGTAATCTTCGTCGACATATAATGACACATACTGGTGAACGCCCTCACAAATGTGATGTTTGTGGTAAGGGATTTATACAGGCAATTTCTTTAGAAGAACATATGCGTGTTCATACAGGAGAAAAACCTTTTGTGTGCAATTATTGCGGAAAAGCCTataaacaatcaaaacaatttaaGGTGCATGTAAAGAAACATGTGCAACCTGATGTAGGTAAATCTGAAATACAAAAAGAACGTAAGAGAAATGATGTTTCTCGACgtctaaaaattattcattctgATGAAACGGAACGATCACATGTGTGTGATATTTGTGATAGAGGGTttacaacaaaaacaatattatctGCACATTTACTTACTCATGGCGATAAAAAGTTCCTGTGTAGTGATTGTGGTAAAggatttgttacaaaaattggATTACAGTCTCATAGTAAAATTCATACTGGAGAGAAACCTTATTCTTGTAATGTGTGTGGAAAAACATTTGCTCATACAGCATCATTAAAAGttcacacatatgtacatacaggTGAAAAACCTTattcttgtaaaatatgtgataaaaGATTTTCACAAAGTAGTCATTTAAGAACTCATGGAAATTTAACTGTGCACATGAGAATTCATATGGGAGAAAGACCTTTTACTTGTAGTATTTGTGGAAAAGAAGGAGCATTAATACCAATTTATTCTTTAGGTGATGATACAAATGAATCGATTCAAATAGCTGAAATGTTTATGGCATGTACTTCACTaatggtaGTAAAGGATGATGGATTACCATCTAATATGTGTGAAACATGCGTAAATCAAATTAATCAagcttatttatttaagaaacaaTCTGAAAGAAGTGATATTGCTTTACGGTACTATTCAGATATAAAAGAATCTCATACATTACctgaaatagaaattaaagaAGATCTAGGAACTGAAATTCAAAATGATACAGATATACAAGGTACAGATGATAATGTAAGCGTTTATTTAGAATCCGAAGATGATGTAGACTTAATAACACGAacagaaaatgataaaaaagagaaaatagaCACTCAAATTATTTCTGAAGAAGTTCATTTACGAAGTCATATGCTTGTACATAGTGAAGAAAAACCATTTCAATGTCATGTATGTGAACGAAGATTTAACTCAAAACCTAATTTAAAACGACATGTAATGACTCATACAGGAGAAAGACCACATCGGTGTGATGTTTGTGGAAAAGggTTTATTCAGTCAGTTACACTTACTGATCATATGAGAGTTCATACAAAAGAAACTCCATATGTTTGTAGTCATTGTGGAAGAGCGTTTAAACAATCTGGGGAGTTAAGacgtcatttaaaaaaacatacagatCCAGAAAATGCAGAAAATAAAAGTCCAAGAAAACGTCGGCCACCAGCACCAAGAGATCCAAATAAACCTCCTCCAGAAAGAAAATATCGACCTTCtctagaaaaaacatttttatgttgcAATTGTGGAAAATGTTTTGCAAGTAACACGTTATTAGAAATACATAACAGAATTCATACAGGAGAAAAACCCTATACTTGTACTGTTTGTAGTAAATCATTCTCACAAGTTAGTACATTAAAGACTCATATTTTAGTTCATACaggagaaaaaaaatatgattgttatgtgtgtaaaaaatcatttagacATCGTGTAGCACTTAAACagcatattttaattcatatggGTATTAGAAAATATGCCTGTACATTTTGTCCTAAAACATTTACACAAAGTAGTCAGTTGAATTATCATCTAAGAACACATACAGGAGAAAAACCATATTCTTGTGCTGTGTGTGGAAAAAGTTTTGCTCTTAAAGGTAATCTTACAGTTCATATTAGAACTCATACAGGTGAAACTCCATATATATGTTCCATTTGTGGTAAAGGTTTTTATGATTCTAGTAGTatgaaaaaacatcaaaaagGTCATGTGGATAATAGATAA
Protein Sequence
MDICDLKPLFNENLINSEECSVISDILMEWCSVQIFQNDGLPSHICSKCLKQMNEAYLFRQQCIKSDSILRSFVEKPEITDVKIELASTSPEYLTHSDIEIKIFSTEIELNVHMKTKKHPYRRILCNICAKPLSFRHIDVHMRTHTKEKPYTCDFCGAQFSVNGNLRRHIMTHTGERPHKCDVCGKGFIQAISLEEHMRVHTGEKPFVCNYCGKAYKQSKQFKVHVKKHVQPDVGKSEIQKERKRNDVSRRLKIIHSDETERSHVCDICDRGFTTKTILSAHLLTHGDKKFLCSDCGKGFVTKIGLQSHSKIHTGEKPYSCNVCGKTFAHTASLKVHTYVHTGEKPYSCKICDKRFSQSSHLRTHGNLTVHMRIHMGERPFTCSICGKEGALIPIYSLGDDTNESIQIAEMFMACTSLMVVKDDGLPSNMCETCVNQINQAYLFKKQSERSDIALRYYSDIKESHTLPEIEIKEDLGTEIQNDTDIQGTDDNVSVYLESEDDVDLITRTENDKKEKIDTQIISEEVHLRSHMLVHSEEKPFQCHVCERRFNSKPNLKRHVMTHTGERPHRCDVCGKGFIQSVTLTDHMRVHTKETPYVCSHCGRAFKQSGELRRHLKKHTDPENAENKSPRKRRPPAPRDPNKPPPERKYRPSLEKTFLCCNCGKCFASNTLLEIHNRIHTGEKPYTCTVCSKSFSQVSTLKTHILVHTGEKKYDCYVCKKSFRHRVALKQHILIHMGIRKYACTFCPKTFTQSSQLNYHLRTHTGEKPYSCAVCGKSFALKGNLTVHIRTHTGETPYICSICGKGFYDSSSMKKHQKGHVDNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01050880;
90% Identity
iTF_01050880;
80% Identity
iTF_01050880;