Basic Information

Gene Symbol
Trerf1
Assembly
GCA_029203775.1
Location
CP092093.1:7237228-7261948[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.9e-09 2.8e-06 28.1 0.1 2 46 1426 1470 1425 1470 0.96

Sequence Information

Coding Sequence
ATGTGTACAAGAAGTAAGTTTTTTTCGTTGCCGGAGCACACTGAGTCTCTAGGGCACCTGCGCTACCACCGACCGATAACAACGCGTCTTCGGATAATGGTCGAAGCGGCGTACACATTTTGTATAATGGTTAGGGCAAACGGTGGGCATGGGACAACGGATGATGTTAACGTTGGATACTGTGGTGACGATTCAGGTGGTCCTGGTAGTAGTAGTATCAATGAAACGTCAGCAACGACAGTTCTTGACCTTTTCGATAGTTCGAGCGGTGGTCACGACTTAACTCTTTCACCACAAACATTCACATCATCAGCCGAAGCATTCATTAATGATAACAGTGACAGTCTCGGTGTTCCACAAGATTCTGTCGATAATGtatGCACCACTGAAGAACTTAAGAAATCTGTTTCTGTTACCACGAACGACGTGACAAAACTGACTGTGAAAAGAGCACGTCCGAAAGCTGCATCACCAAATAGACAAGGACCACAACAATGCCAGGTCTGTTCGAAAGTGTTCGGCAATGCGTCGGCCTTAGCAAAACACAAATTGACGCACAGCGACGAACGCAAATACGTATGTTCAATGTGTGGAAAAGCGTTCAAGCGGCAAGACCATCTCAATGGACATATGTTAACCCACCGCAACAAGAAACCGTACGAATGCAAAGCGGACGGTTGCGGCAAATCTTATTGCGACGCACGTTCCTTACGTCGTCATACAGAAAACCACCATAGTGGTGGTGCTGCTGTTAGCGGAGTCGGAAATAATGGAGCTGCTGCTGTTGCAGCACTTGCAGGATCTGGAGGATCCGGTAGTGGAGGTGGTGCATTAATCGGTGCTGCAGCAGTTGTTAGCACTTCTACTTTATCTCCAGCGCAAGgtGCAGCTTCTGGAGATGCTGCATCACCACATGGATCAGCGTCGTCAACATGTATTCAATATGCTCCACCACCTACGAATGGTTCAACAGACTTAAAGAATGGCTCTGAAAATGGCTTAACAGGTACAAAAACTGGTAACAACACGGGTAAAAGTCAATTACAACAATTGCTTGCAAGTGAACCAGCTAGTAAGAATGGTAGCAATACGCCAAACAATGATGGCTTAACAAAACAACAACTCGACCTTATACATCAAATTATGGAACAGACACAAAGGCAATCTCAGCAAATCAGTGCGGCAGCAGCGAGTAATAGCACGTCGAATAAAACATCCGGATCATCGGCTCGAACTTCGTCTACAGCCAAACCGAAACTGTCGAGAACATGGAGTGCACCGGTCCAAACTTCAAGTGGTACCAGTAAATCTGGTGTTGGATCAAACGGATCATCTGCATCTTCTGGAAATTCTGGTCATGTTAGGTCAAGCGGAGTTGCAGTTTCCGCTGGTGGAGTGGCTGGCGCAGGAGCATCGTCGGGAGTTCAAGGTTCCGGATCTCCTGCCGTTGTGGTTACACCGAAACCAGTGGAATGTAATCTGTGTCATcgaaaattcaaaaacatacCAGCTCTCAATGGACACATGCGACTTCATGGAGGCTATTTCAAGAAAGACGCGGAAAACAAGAAATGTGAAAAAAAGGAATCGACCGGTCCACCACTTCAAACAGCAAGCGTGAGCGTTCGTGCATTAATCGAAGAGAAGATCATTAGTAAACGTACAACAAATCCACAAAATATAACAGTGACGTCTTCAACTGCATCTGCACCGACAACACCTACTGCAGATTCAAACAGAACAAACGCCCCGCCTCTTTACCCACTAACTTCGTCTTCGGATACCACAAAAGTTACTTCGTTTGTTGTTCCTGCTCCTCCAAATCACACTGTTACTACATCTACAGAAAAAATACGTCGTCATAGTGACActgaaaaatttacaataccACGAACACCGAATACTTCAGTGTCTTCTACTACGGTAACAGCGCAACAAGAAGCAGAAGCACTCgcggatttaattttaaaacgtgGTGCAAAAGTAGTCAAGAGAACTACATCAGATCCTGGAGGTCAAACTCAACAGCAActtcaaattcaatttcaacAAGCGAGTGATGCATTTGCACTCGCTGGTGTAACGTATCAATCCGATGACGGATCAGGGTATTTTTCACCAAGTCTCCAAGATGATGTTTTTCATCAGGTGCAAGATACTATGTTATTACAAGGCGTTGATGCAACTCAACTTGCTGAAAGTATACAGTTGCAGGCCGCATCACTGCTTCAAGATCAATCGGCTGATCAACAACTGCAAGATATTGCTTCATTGGAAGATTATGCGAGCGTTACAGCAAGTTTGCAAGAAAGTGTAAACAGCCCTTCATATGGAGGACCTCACACGGTCAATCATGAATTACAAGCGGTCTTGGATTCTCCATTACCTGAAAGTTTAGCGGAGTTCAGTGCGTATCATCCTTCTGATGCAACGGCTAACTCTTCATCGACAGCTGATGATAGTGCATCACCACTGCAGAGGTTTGCAGCATCTTCTGTATCACCTAGAACAGGATCGCCTCTGGTACGTCACGATTCACCTGGATTTGCGTATCCTACACCACCTGCGAGTCACGAAGGACAATCTCCTGGTGGTGGATTTAGTGGCGCTCATCTTTTACCAATGTTATCACCGCAGACTGTCGGAGATGGCCAAAACAATAACGCGTTTGCGAGGGCGACTGACTTGGAAGAACCACCTCAGGCATCGAGTCCACTTTCTGCTGCGTTTTATACTTCGACCATGTCAAGTGCAGCTGCTGTGGAAGAAGCTCTCGAAGAAGTTTTGCCCGGAGAAACAATTGCACCGGATGACATGTACCCCAGTTTAACAAACTCTCCACCTCCAGCACCGCAAAGTCCTATGTCAGTTGGTATGACACCTGTTCCTTCACCAAGTGTACCTGCATCTCCAACAATGGTCAACTCTCCTGCACACGTCGCATTTCCTTTATCTTCTCCTCATCATTATGCAGCACTTCAATCACAAATGATGCCAAATTCAGAAGATCCACTTTTATCTAGCAGTCCTAAAGATTTTGCAACCAGAAAACGATTTGAATTCAATGCAGGAAATATCCAATCGTTCCGAATCATATCAACAACAGGAAACGATGCCTCGAACGGAGGCTTAATCGAACTACCTCCTGGAAGTGCTACGGCTTTCAGCGGCATTCTAGTCGATTCAAACGGAGAACTTAAATTCATTCAAGCTGCTCCCGGGACATTTCACAATGCTAAAAATATTGTCGTTACTTCGACAGGTGCACTAAGTCCCTTAGGCACTGCTCCAAATGGTAGCTCTCAAGCACCAACTGTTGTACAAATAGTCGAAGCTGCACCGTCGCAGTTACAACAATCGGTTTCTTCGGCACATGCACTTCGTACTGTGACAGTTTCACCACATCATACACACCATCAACAAAATCAAATACTTCAACCGCATAGAACGCATCATCTTCAGAGGCTCGGTAATAGAGCTGTACAATGTACTGTACCTGGAAAACCAAACGTAACCCCAAGGCCTAAATTACATATTGCTGTTGATAATCTCAAACAAGAAGAAGCAGATGATGTGTTCTTGAGTCCAACGATGATACCTGCAAGTCCAATACGAGCCTCGAGAAAAAGACCACGTTCAGAGCCAACATTAACAGTACCAATCGTACATCAATCACGACTACGTGCTGCTAAAGGGAGACCACCAGGTGCCGCTCCTTATACACCAGCACCGATGTTAAATCCATCGAGACCTGGACCTGGCCTCTATGCACATGCAAAATGGAAAGCAAGTTCTCCATCAGTGTCCGCATCTAACTGTTCAAGAAACACGACATCGTCGACTGGAAGAAAATTCGGAAATTCAAATAGTAATAACAATCCTGAGAGGCGGAATTGTTCAAGTCCAGTTGACAATAGTACACCAGAGAGCGATTCCACGCCGCATATCAATGTAGGATGTCAGTACCAGTGTTCGTATATACCAGATGTAATAATGAATCGAGGATCAAACACGAAAGAAGACAGGGAACCgaattatgaacatttattatGGGATCCTTGTATTACGTCGACTTGTACTGATGCAGAAGTGGAAATGTATCTAGAATTTGCTTGCTGTGCTGCTGTTCCCGGTGGTGGAAGAAATAAAGAATACGCTCTACATTTACTTCATATGTGTAGTGGAAATATACACgaTGCAATGTTGAAATTAATGCAACCGACACCATCGTTGCCTCCTGATCATCCTCTACTCGCATATCAATATTGTGAAAGCGATAAATGGTCAACACAAGAAACAGAAGCGTTCCATAGAGCGTTATTGAAACATAATAAAGATTTCAGTAGCGTTTCTCGAGATATAggaacaaaaaatgtaaaacaatgTGTCCAGTTCTATTATGTATGGAAGAAAGTCTGTTCTGACGAATATCGAAGGATGAGAGGTACTCTTAACACATCTTCAAGAGATACGCCTCCTTTAAGAGATACAACGGATGCTTTCGATATGAAATTGCTTGGGATGGTCGATGCAGAACCACCTTTAGTACAAGCGCCGGTAACGCACACGATGGACTTACCGAGAACGTTTACTTGCGAATATGCTGATTGTTCTGCTAGTTTCAATTCACGTGCTGCACTGAACGGACATATCCGAATCCATGGAGGGACTGTTCGAAGATCACCGACGCCCGGTCCTCAACAACAACAGAATAATATCGGCGGCGTGATGGGAAATTCTGCGATATCTCATCAACAGCATGCTGGTGATATGGCATCTCGACGTCAGTCCCAGCAACATCACCATCAGACAGATGAAGAATTTCCATGTAAAGTTTGTGGGAAAGTGTTCACGAAGATCAAGAGCAGGAGTGCTCACATGAAATCGCACCGGCCACCAGACGCCGAGCCTAAACGTGTTGCAAAAAGCGACGCTCCCTGTAGTAGTCCATACGATGCATCAATGTCACCGGCAACGCCAAACGCTGTACATTCACCATTACTCGGCTCACAGTAA
Protein Sequence
MCTRSKFFSLPEHTESLGHLRYHRPITTRLRIMVEAAYTFCIMVRANGGHGTTDDVNVGYCGDDSGGPGSSSINETSATTVLDLFDSSSGGHDLTLSPQTFTSSAEAFINDNSDSLGVPQDSVDNVCTTEELKKSVSVTTNDVTKLTVKRARPKAASPNRQGPQQCQVCSKVFGNASALAKHKLTHSDERKYVCSMCGKAFKRQDHLNGHMLTHRNKKPYECKADGCGKSYCDARSLRRHTENHHSGGAAVSGVGNNGAAAVAALAGSGGSGSGGGALIGAAAVVSTSTLSPAQGAASGDAASPHGSASSTCIQYAPPPTNGSTDLKNGSENGLTGTKTGNNTGKSQLQQLLASEPASKNGSNTPNNDGLTKQQLDLIHQIMEQTQRQSQQISAAAASNSTSNKTSGSSARTSSTAKPKLSRTWSAPVQTSSGTSKSGVGSNGSSASSGNSGHVRSSGVAVSAGGVAGAGASSGVQGSGSPAVVVTPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDAENKKCEKKESTGPPLQTASVSVRALIEEKIISKRTTNPQNITVTSSTASAPTTPTADSNRTNAPPLYPLTSSSDTTKVTSFVVPAPPNHTVTTSTEKIRRHSDTEKFTIPRTPNTSVSSTTVTAQQEAEALADLILKRGAKVVKRTTSDPGGQTQQQLQIQFQQASDAFALAGVTYQSDDGSGYFSPSLQDDVFHQVQDTMLLQGVDATQLAESIQLQAASLLQDQSADQQLQDIASLEDYASVTASLQESVNSPSYGGPHTVNHELQAVLDSPLPESLAEFSAYHPSDATANSSSTADDSASPLQRFAASSVSPRTGSPLVRHDSPGFAYPTPPASHEGQSPGGGFSGAHLLPMLSPQTVGDGQNNNAFARATDLEEPPQASSPLSAAFYTSTMSSAAAVEEALEEVLPGETIAPDDMYPSLTNSPPPAPQSPMSVGMTPVPSPSVPASPTMVNSPAHVAFPLSSPHHYAALQSQMMPNSEDPLLSSSPKDFATRKRFEFNAGNIQSFRIISTTGNDASNGGLIELPPGSATAFSGILVDSNGELKFIQAAPGTFHNAKNIVVTSTGALSPLGTAPNGSSQAPTVVQIVEAAPSQLQQSVSSAHALRTVTVSPHHTHHQQNQILQPHRTHHLQRLGNRAVQCTVPGKPNVTPRPKLHIAVDNLKQEEADDVFLSPTMIPASPIRASRKRPRSEPTLTVPIVHQSRLRAAKGRPPGAAPYTPAPMLNPSRPGPGLYAHAKWKASSPSVSASNCSRNTTSSTGRKFGNSNSNNNPERRNCSSPVDNSTPESDSTPHINVGCQYQCSYIPDVIMNRGSNTKEDREPNYEHLLWDPCITSTCTDAEVEMYLEFACCAAVPGGGRNKEYALHLLHMCSGNIHDAMLKLMQPTPSLPPDHPLLAYQYCESDKWSTQETEAFHRALLKHNKDFSSVSRDIGTKNVKQCVQFYYVWKKVCSDEYRRMRGTLNTSSRDTPPLRDTTDAFDMKLLGMVDAEPPLVQAPVTHTMDLPRTFTCEYADCSASFNSRAALNGHIRIHGGTVRRSPTPGPQQQQNNIGGVMGNSAISHQQHAGDMASRRQSQQHHHQTDEEFPCKVCGKVFTKIKSRSAHMKSHRPPDAEPKRVAKSDAPCSSPYDASMSPATPNAVHSPLLGSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2