Basic Information

Gene Symbol
Trerf1
Assembly
GCA_034766995.1
Location
CM068318.1:17390196-17426825[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.3e-09 6.8e-06 27.3 0.2 2 46 1329 1373 1328 1373 0.96

Sequence Information

Coding Sequence
ATGTGTGACACGTGTGGCACTGCTCTGACGATGTCGCATCTTTTAACACAATGCGATCGTTATGCGAGGATTAGGAATCGTCTGGtatgcAACACTGAGGAGCTAAAGAAATCTGTTTCTGTTACCACGAACGACGTGACAAAACTGACTGTGAAAAGAGCACGTCCGAAAGCTGCATCTCCAAATAGACAAGGGCCACAACAATGCCAgGTCTGTTCGAAAGTGTTCGGCAATGCGTCGGCCTTAGCAAAACACAAATTGACGCACAGCGACGAACGCAAATACGTATGTTCAATGTGTGGAAAAGCATTCAAGCGGCAAGACCATCTCAATGGACATATGTTGACGCACCGCAACAAGAAACCGTACGAATGCAAAGCGGACGGTTGCGGCAAATCTTATTGCGACGCACGTTCCTTACGTCGTCATACAGAAAACCATCATAGTGGTGGTGCTGCTGTTGGTGGAGTTGGAAATAATGGATCCGCTGCTGTCGCAGCACTCGCAGGTACCGGTGGATCTGGTAGTGGAGGTGGTGCATTGGTTGGCGCTGCGGCTGTTGTCAGCACATCAACTTTATCCCCTGCACAAGGAGCAGCTTCTGGAGATGCTGCATCACCGCACGGATCAGCGTCGTCAACATGTATTCAATATGCTCCAGCACCGACGAATGGTTCAACAGACCTAAAAAATGGCTCTGAAAATAGCTTAACAgGTACAAAAACCGGCAACACGGGTAAAAGTCAACTGCAGCAACTGCTTGCAAGTGAACCAGCCAGTAAGAACGGGAGCAATACGCCAAACAATGACGGTTTAACAAAACAACAGCTTGATCTTATACATCAAATTATGGAACAGACACAGAGGCAATCTCAGCAAATCAGCGCAGCAGCAGCGAGTAATGGCACGTCAAATAAAACGTCTGGATCGTCGGCTCGAACTTCGTCAACAGCAAAGCCGAAACTGTCAAGAACATGGAGCGCACCAGTTCAAACTTCAAGTGGTACCAGTAAATCTGGTGTTGGCTCAAATGGATCATCTGCATCTTCTGCTAACTCTGGTGGTCATGTTAGGTCAAGCGGTGTTGGAGTTTCCGCTAGCGGCGTGGCTGGCGCGGCGGGATCATCAGGAGTTCAAGGGTCTGGTTCTCCAGCCGTCGTTGTCACTCCAAAACCAGTTGAATGTAATCTGTGCCATcgaaaattcaaaaacataccAGCTCTCAATGGACATATGCGACTTCATGGTggttatttcaaaaaaGATGCGGAAAACAAGAAATGTGAGAAAAAAGAATCAACCGGACCGCCACTTCAAACAGCAAGCGTGAGCGTTCGTGCGCTCATCGAAGAAAAGATCATCAGTAAACGTACAACAAATCCGCAAAATATAACAGTAACATCTTCAACTGCGTCCGCACCCACAACACCCACAGCGGATTCAAACAGAACGAACGCACCGCCTCTTTACCCGTTAACATCATCTTCAGATACGACAAAAGTCACTTCATTCGTTGTTCCTGCTCCTCCAAATCACACTGTTACGACATCCACAGAAAAAATACGTCGTCATAGTGATactgaaaaatttacaataccGCGAACGCCGAACACTTCAGTTTCTTCTGCTGCAGTAACAGCACAACAAGAAGCCGAAGCACTtgcagatttaattttaaaacgcgGTGCAAAAGTTGTTAAGAGAACTACATCGGATCCTGGTGGTCAAACTCAACAGCAACTTCAAATTCAGTTTCAACAAGCAAGTGATGCGTTTGCGCTCGCAGGTGTAACATACCAGTCTGACGATGGATCAGGTTATTTTTCACCGAGTCTTCAAGATGATGTTTTTCATCAAGTACAAGATACAATGTTATTACAAGGAGTCGATGCAACTCAACTCGCTGAAAGTATACAGTTGCAGGCCGCATCTCTACTTCAAGATCAGTCAGCTGATCAACAACTCCAAGATATCGCTTCCTTGGAAGATTATGCGAGCGTTACGGCAAGTCTGCAGGACAGTGTGAACAGCCCGTCGTATGGAGGACCTCATACGGTCAATCATGAATTGCAAGCTGTTTTGGATTCTCCATTACCTGAAAGTTTAGCAGAGTTCAGTGCGTATCATCCTTCTGATGCAACGGCTAACTCTTCATCGACTGCTGACGATAGTGCATCACCACTGCAGAGGTTTGCAGCATCTTCTGCATCGCCTAGAACAGGATCCCCTCTGGTACGTCACGATTCACCTGGATTTGCGTATCCTACACCACCTGCGAGTCACGAAGGACAATCTCCTGGTGGTGGATTTAGTGGCGCTCATCTTTTACCCATGTTATCACCGCAGACTGTCGGAGATGGCCAAAACAATAATGCGTTTGCGAGGACAACTGACTTGGAAGAACCGCCTCAGGCATCGAGTCCACTATCTGCTGCGTTTTATACGTCTACCATGTCGAGTGCAGCTGCTGTGGAAGAAGCTCTCGAAGAAGTTTTACCTGGAGAAACAATCGCACCTGATGACATGTATCCCAGCTTAACAAATTCTCCACCTCCAGCACCGCAAAGTCCTCTGTCAGTTGGAATGACACCTGTTCCTTCGCCCAGTGTACCTGCCTCTCCAACAatGGTCAACTCTCCTGCACACGTCGCATTTCCTTTATCTTCTCCTCATCATTATGCGGCACTTCAATCACAAATGATGCCGAATTCAGAAGATCCGCTTTTGTCTAGCAGTCCTAAAGATTTTGCAACTCGGAAACGATTTGAATTCAATGCAGGAAATATACAATCGTTCCGAATCATATCGACGTCCGGAAACGATACCTCGAATGGAGGCTTAATCGAACTTCCACCTGGAAGTGCTACTGCTTTCAGTGGCATTTTAGTCGACTCAAACGGAGAGCTTAAATTTATACAAGCCGCTCCCGGAGCATTTCACAACGCTAAAAATATTGTCGTTACTTCAACAGGTGCACTGAGTCCTTTAGGCACTGCTACGAATGGTAACTCTCAAGCACCTACTGTTGTTCAAATAGTCGAAGCTGCACCGTCGCAATTACAGCAGTCTGTATCTTCAGCACATGCACTTCGAACTGTGGCGGTTTCACCACATCATACACACCATCAACAAAATCAAATACTTCAGCCACACAGAACGCATCATCTACAAAGACTCGGTAGCAGAGCTGTACAGTGTACTGTACCTGGAAAACCAAACGTAACCCCAAGGCCTAAATTACATATTGCTGTTGATAATCTTAAACAGGAAGAAGCAGATGATGTGTTCCTGAGCCCAACAATGATACCTGCGAGTCCTATAAGAGCCTCGAGAAAACGACCACGTTCAGAACCAACATTAACAGTACCAATCGTACATCAATCCCGACTGCGCGCTGCTAAAGGTAGACCTCCAGGCGCTGCTCCTTATACGCCAGCACCGATGTTAAATCCGTCGAGACCAGGCCCTGGTCTTTATGCACACGCAAAATGGAAAGCCAGTTCTCCGTCAGTGTCCGCATCTAACGGTTCTCGAAACACGACGTCGTCAACTGGAAGAAAATTCGGAAAttcaaataacaataacaatccAGAGAGGCGGAACTGTTCGAGTCCAGTGGACAGTAGTACACCGGAGAGCGATTCTACACCACATATCAATGTAGGATGTCAGTACCAGTGCTCGTATATACCGGATGTAATAATGAATAGAGGATCAAATACGAAAGAAGACAGGGAACCGAATTATGAACATTTACTATGGGATCCTTGTATTACGTCTACTTGTACTGATGCAGAAGTGGAAATGTATTTGGAGTTTGCTTGTTGTGCTGCTGTTCCCGGCGGCGGAAGAAATAAGGAATATGCCCTACATTTACTTCATATGTGTAGTGGAAATATACAcgacGCAATGTTAAAACTGATGCAACCGACACCATCGTTGCCTCCTGACCATCCTCTACTCGCATATCAATATTGTGAAAGCGATAAATGGTCAACACAGGAAACAGAAGCGTTCCACAGAGCATTACTGAAACATAATAAGGATTTTAGTAACGTATCTCGAGATATAGGAacgaaaaatgtaaaacaatgtGTACAATTCTATTATGTATGGAAAAAAGTCTGTTCTGACGAATACCGAAGGATGCGAGGTACTCTTACAACATCTTCAAGAGACACGCCGCCTTTAAGGGACACAACGGATGCGTTCGACATGAAATTGCTTGGGATGGTCGATGCCGAACCACCTTTGGTACAAGCGCCGGTAACGCACACGATGGACTTACCGAGAACATTTACTTGCGAATACGCCGAATGCTCCGCGAGCTTCAACTCTCGTGCTGCGCTGAATGGACATATCCGTATCCATGGAGGCACAGTTCGAAGGTCGCCGACGCCAGGTCCTCAACAGCAACAGAATAATATTAGCGGCGTGATGGGAAATTCTGCGATATCGCATCAACAACACGCTGGAGATATGGCATCCCGACGTCAGTCGCAGCAACACCATCATCAGACAGACGAAGAGTTTCCATGTAAAGTTTGTGGGAAAGTGTTTACGAAGATCAAGAGCAGAAGCGCCCATATGAAATCGCACCGACCACCAGACGCCGAGCCTAAACGTGTTGCGAAAGGCGACGCACCCTGTAGTAGTCCATACGATGCATCAATGTCACCGGCAACGCCGAATGCTGTACATTCACCTTTACTCGGCTCGCAGTAA
Protein Sequence
MCDTCGTALTMSHLLTQCDRYARIRNRLVCNTEELKKSVSVTTNDVTKLTVKRARPKAASPNRQGPQQCQVCSKVFGNASALAKHKLTHSDERKYVCSMCGKAFKRQDHLNGHMLTHRNKKPYECKADGCGKSYCDARSLRRHTENHHSGGAAVGGVGNNGSAAVAALAGTGGSGSGGGALVGAAAVVSTSTLSPAQGAASGDAASPHGSASSTCIQYAPAPTNGSTDLKNGSENSLTGTKTGNTGKSQLQQLLASEPASKNGSNTPNNDGLTKQQLDLIHQIMEQTQRQSQQISAAAASNGTSNKTSGSSARTSSTAKPKLSRTWSAPVQTSSGTSKSGVGSNGSSASSANSGGHVRSSGVGVSASGVAGAAGSSGVQGSGSPAVVVTPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDAENKKCEKKESTGPPLQTASVSVRALIEEKIISKRTTNPQNITVTSSTASAPTTPTADSNRTNAPPLYPLTSSSDTTKVTSFVVPAPPNHTVTTSTEKIRRHSDTEKFTIPRTPNTSVSSAAVTAQQEAEALADLILKRGAKVVKRTTSDPGGQTQQQLQIQFQQASDAFALAGVTYQSDDGSGYFSPSLQDDVFHQVQDTMLLQGVDATQLAESIQLQAASLLQDQSADQQLQDIASLEDYASVTASLQDSVNSPSYGGPHTVNHELQAVLDSPLPESLAEFSAYHPSDATANSSSTADDSASPLQRFAASSASPRTGSPLVRHDSPGFAYPTPPASHEGQSPGGGFSGAHLLPMLSPQTVGDGQNNNAFARTTDLEEPPQASSPLSAAFYTSTMSSAAAVEEALEEVLPGETIAPDDMYPSLTNSPPPAPQSPLSVGMTPVPSPSVPASPTMVNSPAHVAFPLSSPHHYAALQSQMMPNSEDPLLSSSPKDFATRKRFEFNAGNIQSFRIISTSGNDTSNGGLIELPPGSATAFSGILVDSNGELKFIQAAPGAFHNAKNIVVTSTGALSPLGTATNGNSQAPTVVQIVEAAPSQLQQSVSSAHALRTVAVSPHHTHHQQNQILQPHRTHHLQRLGSRAVQCTVPGKPNVTPRPKLHIAVDNLKQEEADDVFLSPTMIPASPIRASRKRPRSEPTLTVPIVHQSRLRAAKGRPPGAAPYTPAPMLNPSRPGPGLYAHAKWKASSPSVSASNGSRNTTSSTGRKFGNSNNNNNPERRNCSSPVDSSTPESDSTPHINVGCQYQCSYIPDVIMNRGSNTKEDREPNYEHLLWDPCITSTCTDAEVEMYLEFACCAAVPGGGRNKEYALHLLHMCSGNIHDAMLKLMQPTPSLPPDHPLLAYQYCESDKWSTQETEAFHRALLKHNKDFSNVSRDIGTKNVKQCVQFYYVWKKVCSDEYRRMRGTLTTSSRDTPPLRDTTDAFDMKLLGMVDAEPPLVQAPVTHTMDLPRTFTCEYAECSASFNSRAALNGHIRIHGGTVRRSPTPGPQQQQNNISGVMGNSAISHQQHAGDMASRRQSQQHHHQTDEEFPCKVCGKVFTKIKSRSAHMKSHRPPDAEPKRVAKGDAPCSSPYDASMSPATPNAVHSPLLGSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01050320;
90% Identity
iTF_01050320;
80% Identity
iTF_00004931;