Nign021776.2
Basic Information
- Insect
- Neoneuromus ignobilis
- Gene Symbol
- retn
- Assembly
- GCA_029203775.1
- Location
- CP092094.1:23175427-23190653[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-19 5.1e-16 59.7 0.0 18 89 11 80 4 80 0.93 2 2 5.8 1.6e+04 -2.8 0.0 25 38 212 225 179 226 0.70
Sequence Information
- Coding Sequence
- ATGTCAGGGCACCGATACGTCATGTCCTGCACACCGATTAACCGATTACCAATCATGGCGAAATCAGTCCTTGACTTGTATGAACTATATAATCTAGTAATAGCTCGCGGTGGGTTAGTGGACGTTATTAACAAGAAATTGTGGCAAGAAATCATCAAAGGATTGCATTTACCATCATCTATCACATCAGCCGCATTCACTTTACGCACACaATATATGAAGTACCTATATCCATACGAATGCGAAAAACGGCGTTTAAGCACTCCAGCTGAGCTTCAAGCTGCAATCGATGGAAATCGACGTGAAGGCAGAAGAAGTAGTTATGGAACATACACAGAAATGGTACAGCGTAGCCCAGTTCCCACATCACAAATGTCACCATTATCACTTGTTACACAGCAACAAAACATGGCTGCCAGAATTGGACTTACAAATGGTGTCCATCATCCCTCTCATCCACCACCTCTAGGACAGCAACCGGCAGGCGGTCCTATACCTGGTCTTGCACCTTCAGAATTCGAAGCACGTATGGTTGAATACGTTAAACTCTTAAACAAAGAGTTACGGAATTCTGCTGCTACTCCACCTCGTCAAGGATCGTCTTCACCTCCAGGTGCGACATCACCGTTAAATGCGCTGGAAATGTCGCGGTTGACATTatggaatttatataataataattcggTACCACCGGAACCACAAAGAGAAGCATTAAATTTATCAGAGACCACTCAACAACAACCCATTTCCATTAAGAGAGAATCAGATCGAGACGTGCCACCACCTGCGAAAAGGCTTCTCCATGATGAAGAAATGAGTCCACCTCCAGCACCACCTACACCGACTCATCTTGGAAGTATgagtacaaatattaaaatttccaatagaggAGATGCCCGTAATGGAGATAATTCACTCGTAGTGAGTATGGAATTAAATGGAGTAATGTACCAAGGTGTTTTGTTTGCTCAACAAGCTCAAAGTGGTACACGCAGAATTACAACATAA
- Protein Sequence
- MSGHRYVMSCTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGTYTEMVQRSPVPTSQMSPLSLVTQQQNMAARIGLTNGVHHPSHPPPLGQQPAGGPIPGLAPSEFEARMVEYVKLLNKELRNSAATPPRQGSSSPPGATSPLNALEMSRLTLWNLYNNNSVPPEPQREALNLSETTQQQPISIKRESDRDVPPPAKRLLHDEEMSPPPAPPTPTHLGSMSTNIKISNRGDARNGDNSLVVSMELNGVMYQGVLFAQQAQSGTRRITT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872844;
- 90% Identity
- iTF_00004462;
- 80% Identity
- -