Ntra044887.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neocrepidodera transversa
Gene Symbol
tfip11
Assembly
GCA_963243735.1
Location
OY725355.1:6211213-6225726[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 7.2e-93 1.9e-88 298.2 12.8 1 275 400 671 400 671 0.99
2 2 0.088 2.3e+03 -0.6 0.2 242 271 683 712 674 722 0.63

Sequence Information

Coding Sequence
ATGTCAGACGACGAAATGGAGAAGTTTGAAATTACAGACTATGACCTGGATAACGAATTTAACATTAATAGACCCCGAAAAAAGTTCAGTAAACATCATCAAATTTATGGTATATGGGCTGATGATAGTGACAATGAAGACGACAACAAAGCTTCATATAAATCTAAAAAGCAATCTAAGAACTACTCTGCGCCTATAGGATTTGTTGCAGGTGGTATTCATCAAGTTGGCAAAAAGAAAGATAAAGATAAAGCTATTAAAGATGAAGATAATGATGATGAACCTAAAAGTTCATTTAAAATACGTGATAGTTCAGATGAATCTGAAAATGATGTTCCAGTTAGAGCAGgtTTTGGAATgggaaattccaaaaaatctacCCAATCTACAACTACTGAAATTAATGCAGACATAGCAGGTCTCCGGACCAAAAGTAAAGTTAACCCAGCTTTAATAAATAAGGGCGTAGGTCATTGGGAAAAACATACTAAAGGTATTGGAGCAAAATTGCTTCTGCAAATGGGCTTTCAACCTGGTAAAGGTTTAGGTAAAGATTTGCAAGGTATATCAGCACCTGTCGAAGCTCATTTAAGAAAAGGAAGAGGAGCTATAGGGGCTTATGGACCAGAAAAAGCAGCCAGTATACCCAAACTAAAGgagaaatctttaaaatctgATTATGATAATGAGATAGAAGGGCCAAAAGGAGAATCAAAATGGAAGAAAGAATCTATGAATAAGAAAAGCAGATACTATTACAGAAGCGTTGATGATGTTATTGAAAAAGGTAAACGTCCAGGAGCTTATAGAAATTTGGGAAATGCAAGCGAACTCAGCAAAGTTAAGGTAATTGATATGACAGGTCCCCAACAAAGAATACTTAGCGGTTATCATGCTCTAAGTGGATTAAAAGCACCACCAGGAGTTGAACATTTTGAAGACGTTGTTCATAAAAAGTGTTCAAACTTTGCATTACCTGAAATTCAACATAATCTGGATCTTTTAGTTGATTTGTGTGAACAAgATATTATAAAGACGGATAGAAATAGTAGATTTAATGAGGATAAAATCATAGCATTGGAACATgaagaaaaatccttaaaagatattttaagacAGGAAGATATAATGATTAATAATTTGAACGATGTTATGGGTATTGTGGATAAATTAATGGATAGTTCGCAGACATATTCTTTAGGACAGATtgctaatatatttaaaaacttgcAGgaTGATCACTATGAAGAATACAATATTTACGAACTAGGTGAACTAGCTCCTGGTTTAATAGGACCCCTTCTAACATCCGCTTTAGCTAACTGGAACGCTCTGGTTCATCCTAAGCAGTACATTGAAGTCTTCAGTCAATGGCGGGACATTTTGACGACGCCACGACATCGTGGGAATCTAGAAGGTAATAAAATGGGAATACAGCCATATGATAGTCTCATTTGGCATACTTGGATGCCTGTTATGAGAACTTGTGTTAGTTCATGGAATACACGAGATTGTGATTCTCTTATAACATTAATCGAAACATGGAAACCTCTACTACCTAATTGgatagttgaaaatatttttaatcagttatTGATGCCTAAACTAATCAAAGAAGTCAACGATTGGAATCCTCTTATCGATACAACTCCAATACACGTTTGGATACATCCTTGGATTCCTCTCTTAGatgagAAACTTCAAGCGTCAGTATATCCAGTGAttcaagaaaaactaggaaatgCTTTAACCAATTGGAATCCTTCGGATAGATCAGCAAAGTTGATGCTACAACCTTGGCAGAGAGCTTTATCTCAAGGAGCTTTCGTTGCTTTTCTTCTTAAACATATTGTACCTAAGCTGCAAATATGCATGCAGTCATTAGTTATTAATCCTCTTCATCAGCATCTAGATCCTTGGAATTCGGTAATGGAATGGAGTGATATGCTTTCAGTGGGTAACATGACATTAATTTTGGATAAATTCTTCTTTCCGAGGTGGCTTCAAACTTTGGCTATGTGGTTAAATCACAATCCGAATTACACACAAGTTACTGAATGGTATTCCGGATGGAAAAGGATGCTTTCTGATGAACTTTTAAGTCAACCAACTATAAAAGaacattttcatAAAGCTCTTGAGATGATGAATAGAGCTGTTAATATAGGTCAACAACCTGGCGCTAAAGAATCAATTTCGTACCTGAAGAATATGGAAGAAAATGGAATTACAACTCCAGTGACGCAACCAAGAGTTgagacaattgCTGAAGCAATGAAAATAGCTTCGAAAATACCACAAGGTTTTAAAGATCTTGTGATGAAGAAATGTGAAGATAGAGGTATTCTGTTTGTACCAATTCCCAATAAATATCACGAAGCAAAGCAGGTTTATAAGATAGGATCGAATGGAATGCAGTGTTATATAGACAGAAATGTTATTTTCTATTCACAAAATAATTCCACTTGGATTCCCACAtctcttaataaattattagattcTGCGTAG
Protein Sequence
MSDDEMEKFEITDYDLDNEFNINRPRKKFSKHHQIYGIWADDSDNEDDNKASYKSKKQSKNYSAPIGFVAGGIHQVGKKKDKDKAIKDEDNDDEPKSSFKIRDSSDESENDVPVRAGFGMGNSKKSTQSTTTEINADIAGLRTKSKVNPALINKGVGHWEKHTKGIGAKLLLQMGFQPGKGLGKDLQGISAPVEAHLRKGRGAIGAYGPEKAASIPKLKEKSLKSDYDNEIEGPKGESKWKKESMNKKSRYYYRSVDDVIEKGKRPGAYRNLGNASELSKVKVIDMTGPQQRILSGYHALSGLKAPPGVEHFEDVVHKKCSNFALPEIQHNLDLLVDLCEQDIIKTDRNSRFNEDKIIALEHEEKSLKDILRQEDIMINNLNDVMGIVDKLMDSSQTYSLGQIANIFKNLQDDHYEEYNIYELGELAPGLIGPLLTSALANWNALVHPKQYIEVFSQWRDILTTPRHRGNLEGNKMGIQPYDSLIWHTWMPVMRTCVSSWNTRDCDSLITLIETWKPLLPNWIVENIFNQLLMPKLIKEVNDWNPLIDTTPIHVWIHPWIPLLDEKLQASVYPVIQEKLGNALTNWNPSDRSAKLMLQPWQRALSQGAFVAFLLKHIVPKLQICMQSLVINPLHQHLDPWNSVMEWSDMLSVGNMTLILDKFFFPRWLQTLAMWLNHNPNYTQVTEWYSGWKRMLSDELLSQPTIKEHFHKALEMMNRAVNIGQQPGAKESISYLKNMEENGITTPVTQPRVETIAEAMKIASKIPQGFKDLVMKKCEDRGILFVPIPNKYHEAKQVYKIGSNGMQCYIDRNVIFYSQNNSTWIPTSLNKLLDSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00026045;
90% Identity
-
80% Identity
-