Nasi009373.1
Basic Information
- Insect
- Neoceratitis asiatica
- Gene Symbol
- Aef1
- Assembly
- GCA_030068015.2
- Location
- CM061526.1:91792537-91793631[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0014 15 6.0 0.0 11 48 191 228 188 232 0.82 2 4 1.7e-05 0.18 12.2 0.0 21 52 229 260 226 262 0.89 3 4 0.016 1.7e+02 2.6 0.0 21 48 257 284 255 288 0.85 4 4 0.0001 1.1 9.7 0.1 21 47 285 311 283 318 0.88
Sequence Information
- Coding Sequence
- ATGCACATTAAAAGCTTACAACATGCTCACGCGGCCTCGGCTGCTATGGGGAATTGTGAGATCGTGATTGTGTCATCGTCGCCGAGTAATGCCGCTACGAgtgccaacaataacaacaataataccaCTAACAGTAACAATAATAATGAGAGTAATACAGGAACCCatcaccaacagcagcagcaacaacagcaacaacaacaacaacagcagcagcagcagcagcagcatcaggcGTCAACTACAACCGAAATTCCTATCCCGTTCAATATGCATTTGGCAGCCGCCAGTTCAGAAGCGCACGTTGCTGCTCAGGCAGCCGCAATGGCAGCGGCTCAAGCGGCAGCCGCACAAGCTGCCGCTGCTGAGCAACAGGTGTCAGGTGGTAGTAATGGTACCAATGCAGCAACAATTTTACAGCAACATCCGTTGGCGCATCTAGTAGCCACAGCGGCACACAGCCCAGCGCTTTCTGATCAACATTTCTCAGCGGGACGTGAAGTGGTAGCCAATGGACATAGTGCTGAAAGCAGTACGAATGGCGGGGGTGGTGGAGGTAGCGGCAGTGGGGGCACCAGTAGCGGTAGTAGTGGTGGTGGTCATGAGAAACCTTTCCTTTGTAGTGTGTGCGATCGGCGGTTTCGGCAGTTGAGCACGCTCACCAACCACGTGAAAATACATACCGGCGAAAAACCATACAAATGTAACGTTTGTGATAAAACCTTTCGTCAATCGTCCACTTTAACGAATCACCTAAAGATACATACCGGCGAGAAACCGTTTAATTGTACTTATTGTCCGAAGAATTTCCGACAACTGAGTACTCTAACGAATCACGTAAAAATCCATACTGGCGAAAAGCCGTTCGAATGTGCCGTATGTAAGAAACAGTTCCGTCAATCTAGTACCCTAAATAACCATATAAAGATTCATGTTATGGATAAAGTGTACGTTCCCGTTAAAATAAAAACGGAGGAAGACGAAGGATGA
- Protein Sequence
- MHIKSLQHAHAASAAMGNCEIVIVSSSPSNAATSANNNNNNTTNSNNNNESNTGTHHQQQQQQQQQQQQQQQQQQQHQASTTTEIPIPFNMHLAAASSEAHVAAQAAAMAAAQAAAAQAAAAEQQVSGGSNGTNAATILQQHPLAHLVATAAHSPALSDQHFSAGREVVANGHSAESSTNGGGGGGSGSGGTSSGSSGGGHEKPFLCSVCDRRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPFNCTYCPKNFRQLSTLTNHVKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01358358;
- 90% Identity
- iTF_01045735; iTF_00304042; iTF_00304194;
- 80% Identity
- iTF_01045735;