Ccap006168.1
Basic Information
- Insect
- Ceratitis capitata
- Gene Symbol
- Aef1
- Assembly
- GCA_000347755.4
- Location
- NW:1124859-1132364[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0061 38 4.0 0.0 20 46 192 218 182 221 0.85 2 4 1.8e-05 0.11 12.1 0.0 21 52 221 252 219 253 0.88 3 4 0.03 1.8e+02 1.8 0.0 21 46 249 274 246 277 0.89 4 4 9e-05 0.55 9.9 0.1 21 47 277 303 273 310 0.88
Sequence Information
- Coding Sequence
- atgcatattaaaaGCTTACAACATGCTCATGCGGCTTCGGCTGCTATGGGGAATTGTGAGATTGTGATTGTGTCATCGTCGCCGAATAATGCTGCACCGAgcgcaaacaataacaacaacaatactactAACAGTAACAATAATGAGAATAATGCAGGATCCCatcaccaacagcagcagcagcagcagcaacaacaacaacaacatcaggcGTCGACAACAACCGAAATTCCAATCCCATTCAATATGCATTTGGCAGCTGCCAATTCAGAAGCGCACGTTGCTGCTCAAGCAGCTGCTATGGCAGCGGCACAAGCGGCAGCCGCGCAAGCTGCCGCTGCTGAACAACAAGCGACAGGCGGTAGTAATggaactactacaacaacaattctgCAGCAGCACCCGTTGGCACATCTAGTAGCCACAGCCGCACACAGCCCAGCGCTTTCGGATCAACATTTCTCAGCGGGGCGTGAAGTGGTAGCCAATGGACATAGCGGCGGAAGCAGTACGAATGGCGGAGGCGGTGGTGGCAGCGGTAGCGGTGGCGCCAGTAGCGGTAGTAGTGGTGGTGGTCATGAGAAACCTTTCCTTTGCAGTGTGTGCGACCGGCGGTTTCGGCAATTGAGTACGCTCACCAACCACGTGAAAATACATACCGGCGAAAAACCATACAAATGTAATGTTTGTGATAAAACCTTTCGTCAATCGTCCACTTTAACAAATCACCTAAAGATTCATACCGGCGAGAAACCATTTAATTGTACCTATTGTCCGAAGAATTTCCGACAGCTGAGTACTCTAACGAATCATGTAAAAATCCATACTGGTGAAAAGCCGTTCGAATGTGCCGTATGTAAGAAACAGTTCCGTCAATCTAGTACCCTAAATAACCATATAAAGATTCACGTTATGGATAAAGTGTACGTACCCGTTAAGATAAAAACGGAGGAAGACGAGGGATGA
- Protein Sequence
- MHIKSLQHAHAASAAMGNCEIVIVSSSPNNAAPSANNNNNNTTNSNNNENNAGSHHQQQQQQQQQQQQHQASTTTEIPIPFNMHLAAANSEAHVAAQAAAMAAAQAAAAQAAAAEQQATGGSNGTTTTTILQQHPLAHLVATAAHSPALSDQHFSAGREVVANGHSGGSSTNGGGGGGSGSGGASSGSSGGGHEKPFLCSVCDRRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPFNCTYCPKNFRQLSTLTNHVKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01358358;
- 90% Identity
- iTF_01045896;
- 80% Identity
- iTF_00304042;