Nasi005695.1
Basic Information
- Insect
- Neoceratitis asiatica
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030068015.2
- Location
- CM061525.1:80983434-80997296[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.42 9e+03 -4.1 0.3 42 51 40 48 26 64 0.38 2 3 1e-114 2.1e-110 368.9 30.8 1 299 295 589 295 590 0.91 3 3 0.22 4.7e+03 -3.2 5.5 7 28 622 645 596 663 0.48
Sequence Information
- Coding Sequence
- ATGTCAGATACACTAAACAATAACATCCTGTCCGGTGTTGGTAATGGTGCTGGCGTTAATGCTGATTGCAATGCTGAAGACGTTTCTTCTAATGATCAAAAAcatctcaacaacaacaacaagaacaacaaaaaacatacaaCACGTATTAGCACAAATAGCAATGATGAAATCATCGAGGAAGGTTTTGACTACAGTGATACCGACCTGTTAGACGAGTTAAATGCCAGCGATGACAATGACAACGACAACGTCAGTAACCTCGCTGATGGCGATGAAAGAATTGCGCACAGTCAAAACGATAACAACGATCATCACCTTCCCACCACCACACAAAATACGTTGAATGCGGTGGAGGCAGAGGCAGACGTGCTAAATATCACCGGTACATTTTCTCTTCTTGATGACACTGCAAACGACACAAATTCTCATGACAATAACAGACAATCAAGTGCTGTTGAGAATGTCGTCACCGTTGAGGAGGACTGCGCTGTTGCGCCAATTATGAGTACTGATAATGCGAAAAATACTGCAGTGGCGAGTAGTAGTAGTGATAAGCAAAAAGTCACACCGACTAAGTTAGTTTTGCCTGCAAAAACCGACAACGAAATTGATGACTGCGAGACAAACACAGCAGCTGAGGGCGCTACTGACTCATATTGTCCCATAACGCCAAGACGTATAGTTGATGTGGAAACTGAGTCTACGCCATTGTTGAAGAGCAGTTCGACGACACATATTGAAAACAGCAATAATAGAAATGATGTTGATGCTGATGTTGATGGTAGTAGCGGCAAAGATCATTGTAATGAAGGTTATTATTATGCTGATGAGCCCGAAGATGAATTAATTGTACAGTTCCTGGGAGAAGCCAATCGTATTgCCGAGGCCCGTTTGGCTGCCCGCCGACAAGCGCGCGCTGAGGCACGTGAAATTCGCATGCGTGAATTGGAACGGCAACAAAAAGAGCAGGAACAAAATGCAGATCGTGTTTTTGACATGCACACCTCGTCCGGCATTGATCCATTGTCAAGATCGCGACTTGCAACGGGCGTCGGCAGTTCGCCCCTGGGTGCAGTGCTTAACAGCGCACGGGCTAATTCAATGTCGTCGCGGCGAAGCAGTGAGGATTCACTGGAGGAAGAAGGTCGCAGCCTGCGGGACATACGGCATGAGCTTAAGGACGTTGAGGATAGATTTCGCAAGGCCATGATCGCCAATGCACAGTTAGACAATGAACGTGCATCACAAACGTATCAAATACAATTGTTGAAGGATAAACTGGAAGAAGTCGAAGAGTCTTATGCGCAACTACAGCGTGAATTTAAGGACAAATCACGTGATTGTAATGCGCTGAAAAGGAATTTGGATAAGTTAAATGAAGAGCTTAAATTGGTGCAAGGTCAATTGACTGAACGTGATAAATTAATCGCGGAACAGGGTTTAGTTATTGTGGCCATAGAGAATGAAGAGGGTACTGATGCAAGACGTGCTCTAGTCAGTGTAGAGAATGCTCAGCTGTTAGGTTCAGTGCAAGGCTCATTAGatgtgCGACTGAAAAAATTCAGCGAGGAGAAGCAACAGCTGTTGGCAGAAGTGCAGAAACTGCAGGAGaccatagaaaattataaaagtcaAGGCAAAGGGCGTTCAAACTCACTCAATGGACCAACCGGTTCTGATGAGGATTATGAAGCACAAAGAGAggcgaataaaataatatcagaaTACAAGTATAAATTACAGAAGGCTGAACAGGAAATCGCCAGTTTACAAGCGAGCTTAGCACGTTCAGAAACGCAAGTCATACGTTATAAAAGCACAGCGGAGGCGGCTGAAAAAGCTGAAGCTGAACTCAAAATCGAACGGAGAAAGCTACAAAGAGAAAATCGTGAGGCCATGGAACGTATGGAGGAGTTGGAAACTTCAAATAATCACCTGCTAAAGCGTTTAGACAAATTGAAGAATGCAAAAAGTGCATTACTTAAAGATCTTTGA
- Protein Sequence
- MSDTLNNNILSGVGNGAGVNADCNAEDVSSNDQKHLNNNNKNNKKHTTRISTNSNDEIIEEGFDYSDTDLLDELNASDDNDNDNVSNLADGDERIAHSQNDNNDHHLPTTTQNTLNAVEAEADVLNITGTFSLLDDTANDTNSHDNNRQSSAVENVVTVEEDCAVAPIMSTDNAKNTAVASSSSDKQKVTPTKLVLPAKTDNEIDDCETNTAAEGATDSYCPITPRRIVDVETESTPLLKSSSTTHIENSNNRNDVDADVDGSSGKDHCNEGYYYADEPEDELIVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHTSSGIDPLSRSRLATGVGSSPLGAVLNSARANSMSSRRSSEDSLEEEGRSLRDIRHELKDVEDRFRKAMIANAQLDNERASQTYQIQLLKDKLEEVEESYAQLQREFKDKSRDCNALKRNLDKLNEELKLVQGQLTERDKLIAEQGLVIVAIENEEGTDARRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLLAEVQKLQETIENYKSQGKGRSNSLNGPTGSDEDYEAQREANKIISEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERMEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00303803;
- 90% Identity
- -
- 80% Identity
- -