Ccap007658.1
Basic Information
- Insect
- Ceratitis capitata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_000347755.4
- Location
- NW:755316-770329[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.28 3.4e+03 -3.5 0.2 27 263 33 53 29 66 0.48 2 3 1.6e-114 1.9e-110 368.3 30.8 1 299 282 576 282 577 0.91 3 3 0.21 2.6e+03 -3.2 5.5 7 28 609 632 583 650 0.48
Sequence Information
- Coding Sequence
- ATGTCAGATACACTAAACAATAATATCCTGTCCAGTGTTGGTAATAGTGGTAAAATTAATGCTAATTGCATTGCTGCAGATGCTTTTTCTGATGAACAAAAAAAcctcaacaacaataatagcaaaaaatatacaacaagtAATAGCACAAATAGAAATGATGAAATCATCGAAGAAGGTTTTGACTACAGCGATACCGACTTGTTAGACGAGTTAAATGCCAGtgacgacaacgacaacgacaacgacaacagcTGTAAAATAGCCGATGGCGAAAGAATTGTGCACAGTCGTAACGATAACGATCAACACCTTCCCAGCGCTCAAGATATGTTGAATAAGGTAGAGGCAGATGTACCAAATATCACCGGTATATCTTCTCTTCTTGATGACACTGCCACCGACACAAATTCTCATGACAATAAAAGACAATCAAGTGCCGCCGAGAACGTCTTTGTCGACAGCGCTGGTGCGCCAATTATGAGTACTGATAATGCGACAAACACTGCAGTGTGTGGTGATAAGCAAAAACTCACACTGACTAACTTAGTTTTGCGTGCAGAAAACGACGGCAAAAACCATGACTGCGAAACAAGCACAGCTGAAGGTGCTGTTGACTCATACTGTCCCATAACACCAAGACGTATAGTTGATGTGGAATCTCAGCCTACGCCATTGTTGAGGAGCAGTTCGACAAAACGCATtgaaaacagcaataaaaatgatgtTGATGCGGCTGATGTTGACAGTACTAGCAAAGATCTTTCTGATGAAGGTTATTATTATGCTGATGAGCCCGAAGATGAATTAATTGTACAGTTCCTGGGAGAAGCCAATCGTATTGCCGAGGCTCGTTTGGCTGCCCGCCGACAAGCGCGCGCTGAGGCACGTGAAATACGCATGCGAGAATTGGAACGTCAACAAAAAGAACAGGAGCAAAATGCAGATCGTGTTTTTGACATGCACACCTCATCCAGCATTGATCCATTGTCAAGATCGCGACTCGCAACAGGTGTCGGCAGTTCGCCGCTGGGTGCAGTGCTTAACAGCGCACGGGCTAACTCAATGTCGTCGCGGCGCAGCAGTGAGGATTCACTGGAAGAAGAAGGTCGCAGCTTGCGAGACATACGACATGAACTTAAGGACGTTGAGGACAGATTTCGGAAGGCTATGATCGCCAATGCACAGTTAGACAATGAACGGGCATCACAAACGTATCAGATACAATTGTTGAAGGATAAACTGGAAGAAGTCGAAGAGTCTTATGCCCAACTCCAGCGTGAGTTTAAGGACAAATCACGTGATTGTAATGCgttgaaaagaaatttggaTAAGTTAAATGAAGAGCTTAAATTGGTGCAAGGTCAACTGACTGAACGTGATAAATTAATCGCGGAACAGGGTTTAGTTATTGTGGCCATAGAAAATGAAGAGGGTACTGATGCAAAACGTGCGCTAGTCAGTGTAGAGAATGCTCAGCTGTTAGGTTCAGTGCAAGGCTCATTAGatGTGCGActgaaaaaatttagtgaagAGAAGCAACAACTTTTAGGAGAGGTGCAGAAACTGCAGGAAAccgttgaaaatttcaaaagtcaAGGCAAAGGGCGTTCAAATTCACTCAATGGACCAACCGGTTCTGATGAGGATTATGAAGCACAAAGGGAggcgaataaaataatatcagaaTACAAGTATAAATTACAGAAAGCTGAACAAGAAATCGCCAGTTTACAAGCGAGCTTAGCACGTTCGGAAACGCAAGTCATACGTTATAAAAGCACCGCGGAGGCAGCGGAAAAAGCAGAAGCTGAACTCAAAATCGAAAGGAGAAAGCTACAAAGAGAAAATCGTGAGGCCATGGAGCGTATGGAGGAGTTAGAAACTTCAAATAATCACCTGCTAAAGCGTTTAGACAAACTAAAGAATGCAAAAAGTGCATTACTTAAAGATCTTTGA
- Protein Sequence
- MSDTLNNNILSSVGNSGKINANCIAADAFSDEQKNLNNNNSKKYTTSNSTNRNDEIIEEGFDYSDTDLLDELNASDDNDNDNDNSCKIADGERIVHSRNDNDQHLPSAQDMLNKVEADVPNITGISSLLDDTATDTNSHDNKRQSSAAENVFVDSAGAPIMSTDNATNTAVCGDKQKLTLTNLVLRAENDGKNHDCETSTAEGAVDSYCPITPRRIVDVESQPTPLLRSSSTKRIENSNKNDVDAADVDSTSKDLSDEGYYYADEPEDELIVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHTSSSIDPLSRSRLATGVGSSPLGAVLNSARANSMSSRRSSEDSLEEEGRSLRDIRHELKDVEDRFRKAMIANAQLDNERASQTYQIQLLKDKLEEVEESYAQLQREFKDKSRDCNALKRNLDKLNEELKLVQGQLTERDKLIAEQGLVIVAIENEEGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLLGEVQKLQETVENFKSQGKGRSNSLNGPTGSDEDYEAQREANKIISEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERMEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045463;
- 90% Identity
- -
- 80% Identity
- -