Nasi010284.2
Basic Information
- Insect
- Neoceratitis asiatica
- Gene Symbol
- -
- Assembly
- GCA_030068015.2
- Location
- CM061527.1:23419431-23428796[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9e-11 7.9e-08 32.1 0.0 1 38 510 548 510 553 0.89 2 4 1.5e-13 2.5e-10 40.1 0.0 2 39 565 602 564 605 0.94 3 4 1.8e-17 2.9e-14 52.7 0.0 1 45 619 664 619 664 0.98 4 4 5e-19 8.2e-16 57.7 0.0 1 43 671 714 671 716 0.96
Sequence Information
- Coding Sequence
- atgGGCTTATTACGCACTGCCGAGCAGTTGAAAATCAAGGGTCTTTGCGAGACGGCTGAAAACACAGACGATCTGAACGACGCGGCAACTGCTACAATCACAGTATCGGAGAATATACAGCAGGCCGTGGTGGGTAATATTGTCAATGCCCCAGTAGCAACCAGTCAATTGTCACCCAATatacaacatcaacaacagcagcaacaacaaatcgcTACTAATACCGCAGTGCTTGCGCACAGCATCGGTAACGTCGTGACCACAGCTAATTCACAACAAATCGGCACTACAACAGCAAATACTGCAGGACAGTTGGTAACGGCGAGTACATCGGGCCAACAATCGCAAATTGGGCGTAAATCACGTGTACGTAAGCGTTCAAAATCTCCGgatctgcaacaacaacaaatacataatacacaacaacagcaacaacaacaagttcaaCAACATccacaaacaattttaatacaaaatcaaaatcaagcCGCTATAGTTAGTTTACAACAGACCTCGTCTGGTAATTATATACCAGTGTCCGGTGGACAAACTGTGGTCACCACCAGTGGAGGTGGACAACAACAAACTGTCATAACCGGTGACGAATCAGATACGGACAAACCAGCGCTGTCGAAAATCTGTAAAACAGAAATAGCATCAGCGTCACCGGCGTCAAGCGCATCGGGTGTGTCGGGCACGAATAATGCCGGAAGCGTAACAACTGTTGCAGCACCAGGAACAGCGATTGTTACGCAGATAGTAGTAGCACGAGACGgcaaagataaaaatatgaCTAGTTTAGGAATGGGAATGaATGGCGGAATTCTTGGCGTGCCAATGGGCTTTTTAGATTTTGCACCAGAACCACCAGCACCCTCAGCTACACCTGTAACAGTAACAGAACACGTTGATTTGTCGTGTAATCCAAATACCGACACACGTGATTTATCAAacCCCACCGAAGCACTTGATATCGACAATCACTTGGCTCAACATATGATTCAGCGGCTTGATCAATCTCCGATGCATGGTATGCATCATCAAACGGGCGATGAAAGCAATTCGAATTTAGTTCAGCATATTAAGAGTGAGGTGATTGATgtgaaacagcaacaacaagtacaACAGCAGCaccatcagcagcaacaacagcaattacaTGCTCAACAACTTTCACAGAATCAATcacagcaacatcaacaacaacatcaagtacatcaacaacaaagttcacactcacacacaacACACGTCCAACAACAAGCGCAAACACATCAGGATATCACAGGAGCAACAGTCATGGAAATCGATCCCAGTCAAATAAAACACGAGCCGGGAATGATCATAACACCGGAAATCGTCAATATGATGACAACCGGACATATGGatatgtataacTCCGATACAAGTGAAGATTCAATGATGATAGCAAATGGCTCACCAAACGATCAAAACGAGCCACACTATACCAATTTGGACCAACAACATGTGGATAGTAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATgcattgaaaaatcaaaatatgagCCTTACAAAGGCATCAGTTACATATGGTATACCATCGACGACTTTATGGCAACGTGCCCATCGCATGggcattgaaacgccaaagaaggaAGGTGGTACTAAATCATGGAATGAGGATTCTTTAAATAATGCTTTAGAAGCCCTTCGTTCGGGCCAGATTTCAGCTAATAAAGCGTCGAAGGCATTTGGTATACCCTCGTCGACATTATATAAGATAGCGCGTCGAGAGGGTATACGCTTAGCGGCACCATTTAATGCAGCACCAACAACGTGGACACCAGAAGATTTAGAGCGTGCATTGGAAGCAATACGCGCCGGTCATACGTCCGTTCAGAAAGCCAGTGCCGAATTTGGTATACCAACAGGTACACTTTATGGTCGTTGCAAACGCGAAGGCATTGAACTATCTCGTTCAAATCCAACACCTTGGTCGGAAGACGCAATGAATGAAGCACTAAATTCAGTACGaaTTGGCCAAATGTCTATTAACCAGGCCGCAATACATTACAACCTACCGTACAGTTCACTGTATGGTCGCTTTAAGCGAGGAAAATATGACGTTACTAATACCAGTAGCACCTCCATTAATAATGCATCAGGCAACACTTCAGGAAGCATCGAAATTATCGAACATAGTCAAGAAAACTCGTTACACGTGTTTCAGCAACAGTTCCAGTATAGTCCGTCACCACATCAACAGCCTCAGCATGGCGGTCAATCACAATCACAGACACCTCAACATTTAACTCAACATGTTGTACACATTCAACAACCACAGACTCATCATCAGCAACAAGTACAtgctcagcagcagcagcaacatatccaacaacaacaacaacaagatgtTGTTACATCCAGCAGCCAGGTGGCACATAGCAGTGCATCGGGcggacagcaacaacaaattcaacAGATTTATCATCATCACAGCACGCCGGAAAGAAGTTGA
- Protein Sequence
- MGLLRTAEQLKIKGLCETAENTDDLNDAATATITVSENIQQAVVGNIVNAPVATSQLSPNIQHQQQQQQQIATNTAVLAHSIGNVVTTANSQQIGTTTANTAGQLVTASTSGQQSQIGRKSRVRKRSKSPDLQQQQIHNTQQQQQQQVQQHPQTILIQNQNQAAIVSLQQTSSGNYIPVSGGQTVVTTSGGGQQQTVITGDESDTDKPALSKICKTEIASASPASSASGVSGTNNAGSVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPNTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHGMHHQTGDESNSNLVQHIKSEVIDVKQQQQVQQQHHQQQQQQLHAQQLSQNQSQQHQQQHQVHQQQSSHSHTTHVQQQAQTHQDITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDQNEPHYTNLDQQHVDSKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSSTSINNASGNTSGSIEIIEHSQENSLHVFQQQFQYSPSPHQQPQHGGQSQSQTPQHLTQHVVHIQQPQTHHQQQVHAQQQQQHIQQQQQQDVVTSSSQVAHSSASGGQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00192007;
- 80% Identity
- -