Nint005023.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- grn
- Assembly
- GCA_947623515.1
- Location
- OX392464.1:88196870-88246118[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-19 8e-16 58.3 4.7 1 35 257 290 257 291 0.98 2 2 4.6e-19 2.8e-15 56.6 6.3 1 35 314 347 314 348 0.97
Sequence Information
- Coding Sequence
- ATGCAATCGTCACATACATCGCCTCAGGTATGCCGACCACACTTTCATCCGCCCTTAAGTTCGTGGCTAACCAGCGACCATAAATCATTTCCGCCTGGCAGTCCGTGGGGTAGTCCGTTTGCGTGTCCACAGGATCCCCAGGATAAAGTTGGCGGTCAAGTACAAAGCCATCAAACGGGTCATTCGTTTCCATTCCCTCCGACACCGCCAAAGGACTCAACGCCCGACTCAGTACAAACAGGCCCATCCGAATATCAGGCTGCTGTGAACGCTTTCATGCATCAGGCACAGGCATCAACTACCTCACTTAACGATGCGAGTTGCGCTTTGGACATTAAACCGACGATACCGAACGGTGGCGGAGGCGGCGGCGGTGGAGGTGGCGGCTCGAATCAAGTTTCTGCACCGAAACAACGCGAAGGTACGAATGCGGGTAACAGTAATAGCAATAACAACAATACTAGCAGCAATAATCACAATTCGCATGCGGCTGCCAATGCGGCGAGCAACAACAATAATTCGGCGTTGAATGGCACCAACAGCTTATTTGATAGTACACAAGCTGCATACGGGGTAGGTGGCGGTGGAGGTGGAGGCAGTGTTGGGTATGAGCCCAGCTATGCTGCAGCGTATCACCATCATCACCATCACCACTCACACCATCAGGCGACTGGAATGTTTCAGACAGCTGCCAGGCAAGCGGGTATGAGCAGCACGGATGTGAAGCCACAAAGGACGAAGCCACGCACAAGTGCCGAAGGCCGAGAGTGTGTCAACTGTGGAGCGACGTCAACTCCACTTTGGCGAAGAGATGGCACCGGGCACTACTTATGCAACGCATGCGGACTGTACTACAAAATGAATGGACAAAATAGACCACTAATCAAGCCAAAGCGAAGACTGTCGCTGCAGAGCGCGGCCAAGCGTGCGGGGACATCCTGTGCGAATTGCAAAACCACAACAACAACCCTTTGGCGACGGAACGCCAGCGGTGAGCCAGTGTGCAATGCCTGCGGTCTCTATTACAAGCTTCACAATGTTAATCGTCCTCTAACAATGAAAAAGGAGGGCATTCAAACGAGAAATCGAAAGCTGTCGTCTAAGTCGAAGAAAAAGAAGGGGCTTGGTGGAGCATGCCTTCCCATTGGTAGCCATTTGGGAATGAGTGATTTGATGAAGCCGCTCGACCCGTCTAAGGGTTTCGGAGGCGGATTTTCAGCATCTATGGGACAACATGGACACCTATCCAGCGGCCTGCATCCAGCCCATGCGCACATGCATGGTGGATGGTACGCCAGCGGCATGGGAGCACTGAGTGCATCTAGTGGACTGCAAGGAGGCTTTTCCACAGCGGGCTCATTAGGAGGAGGTGTTGTGCCTCACTCGCAGTCATACCACTTAGGACTTAGCTCGATGGGCACATGGAGGCCTGATTACACGTGA
- Protein Sequence
- MQSSHTSPQVCRPHFHPPLSSWLTSDHKSFPPGSPWGSPFACPQDPQDKVGGQVQSHQTGHSFPFPPTPPKDSTPDSVQTGPSEYQAAVNAFMHQAQASTTSLNDASCALDIKPTIPNGGGGGGGGGGGSNQVSAPKQREGTNAGNSNSNNNNTSSNNHNSHAAANAASNNNNSALNGTNSLFDSTQAAYGVGGGGGGGSVGYEPSYAAAYHHHHHHHSHHQATGMFQTAARQAGMSSTDVKPQRTKPRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGACLPIGSHLGMSDLMKPLDPSKGFGGGFSASMGQHGHLSSGLHPAHAHMHGGWYASGMGALSASSGLQGGFSTAGSLGGGVVPHSQSYHLGLSSMGTWRPDYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00188645; iTF_01357592; iTF_00311464; iTF_00313924; iTF_00984682; iTF_00310668; iTF_01542595; iTF_01223876; iTF_01521553; iTF_01522248; iTF_01116821; iTF_00312247; iTF_00316439; iTF_00313106; iTF_00695127; iTF_01396152; iTF_00235549; iTF_00234472;
- 90% Identity
- iTF_01542595;
- 80% Identity
- -