Cnem008610.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- grn
- Assembly
- GCA_949716465.1
- Location
- OX454333.1:45459695-45493957[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-19 5.6e-16 58.0 4.7 1 35 369 402 369 403 0.98 2 2 5e-19 2e-15 56.2 6.3 1 35 426 459 426 460 0.97
Sequence Information
- Coding Sequence
- ATGGGAATTATCGTGCCAACTGATCGATCGTGGCAGATCACCGTCGATCATCTGGTGGAATGGTGGCTGCTTGGATTGCTATCCATCCATCGATCAGTGGGTATCACACACAAGGTGTGCGCGACATTCTGGTCAATTGGTACACCGAGGACGTACTATGAAGCTGGACTGGCTCACGCATTTGATTTTGTGCTTCTGATTCAGATTCTCTTGGTTATGGAGCCGCGCACCGCTGCCGCTGCCACAGAATCCCAAATGCTCTATTATAATCCCCGATCTGTATTACATAAATCCGTACATAAATCTCACTTGGTGTCCGCTTCTCGAATGCCATCGTCACATACATCGCCTCAGGTATGCCGACCACACTTTCATCCGCCCTTAAGTTCGTGGCTAACCAGCGATCATAAATCATTTCCGCCTGGCAGTCCGTGGGGTAGTCCGTTTGCGTGTCCACAGGAACCACAGGACAAGGTTGTCGGTCAAGTACAAAGCCATCAAACGGGTcaacattcacattcatttccaTTCCCTCCGACACCGCCAAAGGACTCAACGCCCGATTCAGTACAAACAGGCCCATCCGAATATCAGgcTGCTGTGAACGCTTTTATGCATCAGGCACAGGCATCAACTACCTCATTAAACGATGCGAGTTGCGCTTTGGATATTAAGCCAACGATACCGAACGGCAGTGGCGGCGGTGGAGGTGGCGGTACAAATCAAGTTCCTGCGCCCAAACAACGCGAAGGTACGAACAGTAATAGCAATAACAACAATACTAGCAGCAATAATCACAATACGCATGCGactgcaaataataataataatgcggcgaacaacaacaacaattcaacGTTAAATGGCACTGGCAGCAGCCTATTTGATAGTACACAATCTGCATACGGGGTAGGTGGCGGTGGAGGTGGAGGCAGTGTTGGGTATGAGCCCAGCTATGCTGCAGCgtatcaccatcatcaccatcaccactcaCACCATCAGACGGCTGGAATGTTTCAAACAGCTGCCAGGCAAGCGGGTATGAGCAGCACGGATGTGAAGCCACAAAGGACGAAGCCACGCACAAGTGCCGAAGGCCGAGAGTGTGTCAATTGTGGCGCCACATCAACGCCGCTCTGGCGAAGGGACGGCACAGGACATTATCTGTGCAACGCATGCGGACTGTATTACAAAATGAATGGACAGAATAGACCACTGATTAAGCCAAAGCGAAGACTGTCGCTGCAGAGCGCGGCCAAGCGAGCGGGGACATCCTGTGCGAATTGcaaaaccacaacaacaaccctTTGGCGGCGGAACGCCAGCGGTGAACCAGTGTGCAATGCCTGCGGTCTTTATTATAAGCTTCACAATGTTAATCGTCCTCTGACAATGAAAAAGGAGGGCATTCAGACGAGAAATCGAAAGCTGTCGTCcaagtcaaagaagaagaagggactTGGTGGTGCATGCCTTCCCATTGGCAGTCATTTGGGTATGAGTGACTTGATGAAGCCATTGGATCCATCGAAAGGCTTTGGAGGTGGATTTTCAGCATCAATGGGACAACATGGACATTTATCCGGCGGTTTGCATCCAGCCCATGCACATATGCATGGTGGATGGTACGCCAGCGGAATGGGTGCGCTGAGTGCCTCCAGTGGATTGCAAGGAGGCTTTTCCACAGCGGGCTCATTAGGAGGAGGTGTTGTGCCTCACTCACAGTCATACCACTTAGGACTTAGCTCGATGGTAAGTTCAGATTACTAA
- Protein Sequence
- MGIIVPTDRSWQITVDHLVEWWLLGLLSIHRSVGITHKVCATFWSIGTPRTYYEAGLAHAFDFVLLIQILLVMEPRTAAAATESQMLYYNPRSVLHKSVHKSHLVSASRMPSSHTSPQVCRPHFHPPLSSWLTSDHKSFPPGSPWGSPFACPQEPQDKVVGQVQSHQTGQHSHSFPFPPTPPKDSTPDSVQTGPSEYQAAVNAFMHQAQASTTSLNDASCALDIKPTIPNGSGGGGGGGTNQVPAPKQREGTNSNSNNNNTSSNNHNTHATANNNNNAANNNNNSTLNGTGSSLFDSTQSAYGVGGGGGGGSVGYEPSYAAAYHHHHHHHSHHQTAGMFQTAARQAGMSSTDVKPQRTKPRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGACLPIGSHLGMSDLMKPLDPSKGFGGGFSASMGQHGHLSGGLHPAHAHMHGGWYASGMGALSASSGLQGGFSTAGSLGGGVVPHSQSYHLGLSSMVSSDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045129;
- 90% Identity
- iTF_01542595;
- 80% Identity
- -