Nint016317.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- pol
- Assembly
- GCA_947623515.1
- Location
- OX392463.1:145797802-145813051[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00037 6.6 7.9 0.1 21 46 1637 1662 1629 1666 0.89 2 3 0.00099 18 6.5 0.2 25 47 1913 1933 1903 1937 0.83 3 3 3.4e-06 0.061 14.4 0.2 21 49 1937 1965 1934 1968 0.91
Sequence Information
- Coding Sequence
- ATGAGTCGGCCGTCTAATCCTGGAACCAATATATTAACCAAAGTAACCACTGAGCAAGAGTTCGATCGTTTTTGCAAGTCAATCAACAATTTTAGTTTTGACAACTCCGCGAGTTCAGCCGCGAGCAGTGCAAAAATGGTTGACGAAAATCCGTCAGATGAAAATCCCACTGATCAGGGAATAAATAATATTTCGCCAGTGGAAGCTTTAGCTTCGAAAATTGAGCAGACCTTAACGGTCAATCAAATCCATCTCTTCCAGCAGATGGAAACCTTTATGAATGGTATGTTGGAGAAAGTCAATGCTTTGTCAGTTGTTCGCCCAAGTCCACAAGGATCTTATCCCAGCAATAGTAGTAGCGTCCAGCCTGTGAGTGATGCCAATGGTAGACATTCCGGCGCTTATTTCCTCCCATCTGATTTTAACCCAGCAAGACCTCCTCCAAGAGAAACGCAAAGCGTAGCCAACTCCATGGCGTCGGAGATTGTGCGGTTGGACAGGTGGAATGTAAAATTTGAGGGACAAGAAAACGTCGTAGACTTCCTGTTTAAAGTTGATAGGCTCCAAGCCTTGTCGTCCTACACGGATGAACAGGTCACAGCAAACTTCCACAGTCTTTTGGGTGGAAAGGCTAATGACTGGTACTGGTCATTTTTGCGAAAAAACCCTCATACAAGGCTTGGAGAGATCAAAACTGCTATGAAGAGGGAGTTTGGGCGAAAGGAAAACGATGTCGACGTATACATGAGATTGCTCACCCGCAGGCAAGGATTTAAGGAGAGCTTCGACGACTTTTATGGCTCCATCGTAGGTCTGAACGACCGCCTGAACGATCCATTCGACGCCAAAAAGTTAGTCGAAGTTATTAGAAATAATTCAAGAGATAAACTGGGAGAGATATTACTGTCTTCCAGCATATGCGACTTGGAGCAGTTACGCCATAAAGGCAGAGAAGCAGAACGGTTTCTGGCAAGGCGAAACTTTAGTCAGCGCTCTGTTCAAGAGCTCCATCTGCCGGAAGAGGAGGATGAGGAACTAGTAGCTGGTGAAGTAGCAGCGATGAGTAGGCCTGAGGGAAATCGGCCATCAAACTCTCTTGTTtgctggaactgtgacgttaaagaggaacgacaggacagtcggggacagtcgttcCAGCAACTTCCCCGAAAGGCAGAAGTAGAACCTTTAAACGGGTCTGGATGTAGGAGTCAGGTGTCGAATAGTCCAGCGGTTAAGATTCTTCAGCGAAACCAGGAACCAATTCCATCCAGTCATCCTGCAAACAAGTTTGCTCTAAAGACGCTTCATGAAAGGAAGCAGAAATATTATGAGTTGCGCGCTAAGATTATGGGTGGAGGAATGGGTAAGACCGGATCACTGTCTAAGTGTAGGGAGCGGTTTCGAAAGCGGAAACACTTTCGAAAACTCATTGTCGAGACAATCTTAGCTTCCGAAATAGACGGTCGGATGTACGCTAGTGTTCGTCTCAAGGATGAACAAGTCCTTGGACTGTTGGATAGTGGTGCATCCATCTCTGTTTTGGGAGAGTCAGGGTTGGAATTCATAGAAAGGAATGGGATTCAGATGAGGCCATACAATAATGTGGTGAAGACCGCAGATGGAGGCTCACATAAAATTGTCGGCTTTTGTCAAATCCCGGCTACGCTGAACAAAGTGACTAAGACCATTACTTTCTAtgttattccaaacctgacacaaaaagtttatctcggcatggatttttggaaggagtttgaactgatgccacaggtctctgcactggacgagcctacacttagagaggaggaaaatgtggattcacaaggggaccctagtttcatggtacttacaccagagcagcaaactaagctagagtcggtgaagaagcaatttccaaatttcgcagacaagggtctcggtcgtactcatctcgaaacccatgtaatcgatgttggcggagcagtgcccattaaatctaggcactaccccctgtctccggttcggcaggaagaggtttacaaggaactcgaccgtatgctagaacttggtgtgattgaagaaagcaactctgcttggtgttccccgatagttctagtcaggaagccaggcaaagtacgcctctgcttggatagcaggaagttgaacaaggtgacaaagccggatgcatatccgcagccacttatagacggattactcggtaacttggaggacacattctttatctctgggcttgatctcaaggatgccttttcgcaaatacctcttgagaaagagtccagagagaagacagcatttgcagtaccaggacggccattataccagtttgttgtaatgccgttcgggttatgcaatgctgcccaaagaatgtgtcggctgatggaccgagtaatgagcgttctacctccccgcttgcgcaaacacgtaatcaaatacatcgatgatcttctgatttgtacaccggatttcgacacccatatccaagttttggcagaagtggcttcctgcctgcgtagggcgaacttaacaatcaacgtaaacaagagcaagttctgcatgcgggagattaagtttcttggttacatcgttggtcagggtaacctcaagaccgatcccgaaaaggttgccgcgatggtagaatttccaattcctaagaccgtgagacaggtgcggaggtttgtaggcatgactgggtggtataggcgattcatcaagaattactccgatctttcagctccactaaccgattgccttaaaaagcgaaagggcttcgagttgacatctgcggcagaagaggcggttaagaagttgaaggaggcacttacatgcgccccagtcttatcacagcccgacttcaagaaggaattcattattcagagtgacgcttcttctgaagcggtaggcggggtgctttgccaacaagacgaagatggaaacgagaagcctatagcttttatgtcaaaaaaacttactaaagcccagaaaaattttacggtgactgagcttgagtgtctggcggtgttgttaagtgttagaaagtttcgtgcctacattgatggtttaccatttcgagtcataactgatcactccagtcttaagtggcttatgtcacttaaagatttgggcggaagactggcacgttggagtctcgagctccaacggtttacgttcgagatcgaacatcgcaagggatccctcaatgtagtgccggatgccttgtcgagaggacatatggaagagatttcggtcacgatggtaggtgaggatatagatttgtcttctgctgagtttgactctgaggagtatggtagacttcgagaggacattgagaagaatcaagcctcacttccggatctcgttgtatccgaaaagtttatatacaaaagagtgaggttcagaagtggggatcttgaaaacgaggattcactttggcggctttgggtgccgcacaccttgacacaaacgcttataggaatgaaccacaacaccaagttaagttgccacggtggttttcttaaaacttataaccgcataaaggaaaagtactactggccgaaaatggcttctgaaattaaaacgtttgtgagccagtgcgaggtgtgtaaaaccacaaagtcgtcaaatcaaattcttcgtcctccgatgataaaccagattctctcagagcgacccatgcagaggttgtacattgatttgcttggcccataccctcgcaccaagcgtggaaatatcttcatctttatcgccattgaccatttctctaaatatgtcttcctcaaggcgctttctaaggcaacaacgtcaaggataatctcattcatggaaaccgatatttttcatgcctttgggactcctgagtttgtccattcggataatggcaaacagttggtttcttcagaattcaaaaggttcgtggacagctatggcgttcggcatattcgaacggcattctactctccacaggccaatgtatctgagagagtcaacactagcatcctcaacaagcttcgtgtattcgtggacgatgaacaaaatacgtgggacacccatttgtccagtatagcgtgcgctttacgtgccgacacccatggttccattggttgtcagccctattacgccctattcggccaaaatatgatcaaccatggatcatcgtacaCAATACTTCGAAGCTTGAAAGCACTTGGGGATCCAGATATATTGGTCACACCACGCGAGACGACGAtggagatcgcacgtcaaaagttgtccaggaacctgctgaaggcgcatTCTATTGACAATGTTGAATCTAAGGTTAAAATTAAGCAAATGATGGAAACCTTAACCGGTTTAGAGATAAACCCTAGCGACCAATTACCCAAGAATATTTGCAATGATTGCAAGAAGCAAATTCAAGCGGCATATAAATTCCGTGTTAATAGCCAAAGAATCGATCGATTATTCAAAGGTTACCTTACGCAAGTCTATCCCGAACAAAAAAGAAATGAAGAAGATGAAGACGCTTCGGACGATACATCGTCTCAAATGTCCGAAGATAAAACCATCGATGAGCAAACAAAAGATGACAAAGACTTAGATTTATTTGCCTTCGAATGTAATATATGTCATTTGTATTTTCCTGAGAAAAGAGATCTCGACCAGCACAAAGTAAAGCATGATGGCTCACAGAAGCACGTATACAAATGTGGAAAATGTTTTAAGGAATACAAGTATCGCAATGGCTTACATTACCATTTGGAATCTTATCACCTTCGAGCTAAAGAATATAAATGTGAACAATTCGAATTAGAAGCTGACTTTTGCGGCCACATCATAAAAACACATTACGAGGAAAAGATTTGCCCCCACTGCAATAGATTCTTTAATCAAGCACTATATCTAGAAGCTCATTTGCGGCATCACAATGGCGAAAAATCCTTCGTGTGTCCACTTTGCTTAAAAGGATTTTCGTCTAGTCGATCTCTGCGCAATCATATAAAATTGCACGCCGAACGAGAGTCTTGTTCTTGCGGCACTTGCGGAAATGTGTATGTTTCACACATAGATCTTATAGCCCACATGAAGGAATACAAAAATACTTGTAAAAGTATTGCAGATGAGAGTCTATCAAAGGCGCAAATAAAACAGTTAAAGAGCCCAGATCTGTTTAAAGAAGTTTTAAAAACGGAACCAAGTGAACGTGCTTTTCAAATGAAAGACTCTTTGGTTGAAACTGCTATCTTCAGTATAAAGCATATTGATGAAGATATGGAACAACCTAACGAGAAGCAAGGAAGTTTGATTGCGGTGCATCCATCAATCAAAGTTGAACCCAAACCCAGTGCTCTATTGCTTGAAGACTCGGACGAAAAAGCCATATTTGCTATCAAACGTATTGATACCGATCAAAAAACTCTGTTAGATGACTATAAAACCACAAGTTTGCCATCAATTAGTGCCAAGTACAATTTGACACAAGAAGTTGACAGACTTGAACCAAGCAGTGCAATCGAACAACACAATTCTAGCGGCCTTGAGATAAAAATAAAACAAGAAAAGCCAGATGAATGTCAAACGGTTCATGAAATAGCCAACGAACCGGTTAGTGATGATGACATGTTGGAAAAAAGTTCGGATCCTGACAAAGCACCATTAAATGTCGAACCTCTAACATGTGCAATTCCTGGATGCGATTTCGAATGTGAGTTAGAAGAAGATTTCTTCAAACATATCGCAAGAGAACACTCCAAAGAGAGTAACTGTCCTTACTGCATTAGGACATTTAATCAATCACACAACTTGGAAGGACACTTGCGACATCACAACGGCGAAAAACCCTTCACCTGCCCACTTTGCTCAAAAAGTTACCCTTCAGGTCGGGCTTTGCGAAGGCATATAAATATGCATTCGTTCCAGGATGGTTTGTCATGCAACTTGTGCGAGGAAAAATTTGTCACTCAAAGAAATCTTGCCAACCATGTGCAGGCGCACAAGAATGGATGTAAAAATGATTCTAAATCAAAGGAATACCAACCGAAGGAACCTCTAGGTGCAGAAAAAGTATCGGACATTTCGAATTGTAAAGAAACTGTTAAGGACGAACCTGGTATAACTTTGTTTCAAATAGAGGGTTTGCCTCAGAAAAGTGTGTTCAGTATCGAATTCATTGATGATGTTGACCAGAAAGATCGAATAAAATCTGAACAAGTAGCCTCTGATTTACCATCGACCAGTGGACCCTACTCATTGCTACAACGTGATACTATCGCCGATAAAACTTTTGATCTAACCATAAAAGAGGAGAAACAAGATGAAACTGAAGTTGATTGTGAGGTCATCAATGAACCAGTTAGTGATGATGACCAGTTAAAACAAAATACCATATTCGGAGAACAGTTGGCCGACTCTGATAACATTTCTAAATGTCCAGTTCCAGGATGTGCTTTTGTATGTCCTACTTTTGTATTTTTGTGA
- Protein Sequence
- MSRPSNPGTNILTKVTTEQEFDRFCKSINNFSFDNSASSAASSAKMVDENPSDENPTDQGINNISPVEALASKIEQTLTVNQIHLFQQMETFMNGMLEKVNALSVVRPSPQGSYPSNSSSVQPVSDANGRHSGAYFLPSDFNPARPPPRETQSVANSMASEIVRLDRWNVKFEGQENVVDFLFKVDRLQALSSYTDEQVTANFHSLLGGKANDWYWSFLRKNPHTRLGEIKTAMKREFGRKENDVDVYMRLLTRRQGFKESFDDFYGSIVGLNDRLNDPFDAKKLVEVIRNNSRDKLGEILLSSSICDLEQLRHKGREAERFLARRNFSQRSVQELHLPEEEDEELVAGEVAAMSRPEGNRPSNSLVCWNCDVKEERQDSRGQSFQQLPRKAEVEPLNGSGCRSQVSNSPAVKILQRNQEPIPSSHPANKFALKTLHERKQKYYELRAKIMGGGMGKTGSLSKCRERFRKRKHFRKLIVETILASEIDGRMYASVRLKDEQVLGLLDSGASISVLGESGLEFIERNGIQMRPYNNVVKTADGGSHKIVGFCQIPATLNKVTKTITFYVIPNLTQKVYLGMDFWKEFELMPQVSALDEPTLREEENVDSQGDPSFMVLTPEQQTKLESVKKQFPNFADKGLGRTHLETHVIDVGGAVPIKSRHYPLSPVRQEEVYKELDRMLELGVIEESNSAWCSPIVLVRKPGKVRLCLDSRKLNKVTKPDAYPQPLIDGLLGNLEDTFFISGLDLKDAFSQIPLEKESREKTAFAVPGRPLYQFVVMPFGLCNAAQRMCRLMDRVMSVLPPRLRKHVIKYIDDLLICTPDFDTHIQVLAEVASCLRRANLTINVNKSKFCMREIKFLGYIVGQGNLKTDPEKVAAMVEFPIPKTVRQVRRFVGMTGWYRRFIKNYSDLSAPLTDCLKKRKGFELTSAAEEAVKKLKEALTCAPVLSQPDFKKEFIIQSDASSEAVGGVLCQQDEDGNEKPIAFMSKKLTKAQKNFTVTELECLAVLLSVRKFRAYIDGLPFRVITDHSSLKWLMSLKDLGGRLARWSLELQRFTFEIEHRKGSLNVVPDALSRGHMEEISVTMVGEDIDLSSAEFDSEEYGRLREDIEKNQASLPDLVVSEKFIYKRVRFRSGDLENEDSLWRLWVPHTLTQTLIGMNHNTKLSCHGGFLKTYNRIKEKYYWPKMASEIKTFVSQCEVCKTTKSSNQILRPPMINQILSERPMQRLYIDLLGPYPRTKRGNIFIFIAIDHFSKYVFLKALSKATTSRIISFMETDIFHAFGTPEFVHSDNGKQLVSSEFKRFVDSYGVRHIRTAFYSPQANVSERVNTSILNKLRVFVDDEQNTWDTHLSSIACALRADTHGSIGCQPYYALFGQNMINHGSSYTILRSLKALGDPDILVTPRETTMEIARQKLSRNLLKAHSIDNVESKVKIKQMMETLTGLEINPSDQLPKNICNDCKKQIQAAYKFRVNSQRIDRLFKGYLTQVYPEQKRNEEDEDASDDTSSQMSEDKTIDEQTKDDKDLDLFAFECNICHLYFPEKRDLDQHKVKHDGSQKHVYKCGKCFKEYKYRNGLHYHLESYHLRAKEYKCEQFELEADFCGHIIKTHYEEKICPHCNRFFNQALYLEAHLRHHNGEKSFVCPLCLKGFSSSRSLRNHIKLHAERESCSCGTCGNVYVSHIDLIAHMKEYKNTCKSIADESLSKAQIKQLKSPDLFKEVLKTEPSERAFQMKDSLVETAIFSIKHIDEDMEQPNEKQGSLIAVHPSIKVEPKPSALLLEDSDEKAIFAIKRIDTDQKTLLDDYKTTSLPSISAKYNLTQEVDRLEPSSAIEQHNSSGLEIKIKQEKPDECQTVHEIANEPVSDDDMLEKSSDPDKAPLNVEPLTCAIPGCDFECELEEDFFKHIAREHSKESNCPYCIRTFNQSHNLEGHLRHHNGEKPFTCPLCSKSYPSGRALRRHINMHSFQDGLSCNLCEEKFVTQRNLANHVQAHKNGCKNDSKSKEYQPKEPLGAEKVSDISNCKETVKDEPGITLFQIEGLPQKSVFSIEFIDDVDQKDRIKSEQVASDLPSTSGPYSLLQRDTIADKTFDLTIKEEKQDETEVDCEVINEPVSDDDQLKQNTIFGEQLADSDNISKCPVPGCAFVCPTFVFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045070;
- 90% Identity
- iTF_01045070;
- 80% Identity
- iTF_01045070;