Nswa020783.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- Mbd3
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000765.1:158496-165458[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-24 4.2e-21 75.2 0.1 2 72 6 71 5 76 0.93 2 2 4.4e-05 0.17 12.4 0.1 21 74 78 146 71 149 0.85
Sequence Information
- Coding Sequence
- ATGAACATCTCTGTGGAAAAGAAGCGTAACGAATGCGCCGCTCTGGGTAAAGGCTGGACCCGCGAAGAGGTCCTGCGTAAGACCGGTCTGTCTGCTGGAAAACTTGATGTTTATTACTACAGCCCAACAGGTAAAAAGTTTCGCAGTAAACCCGAACTAGTGCGATATCTGGGCGATAGTTTGGACCTGTCATGTTTCGACTTCCAACAAGGTCAAATAAACACAATGCTGCTCCGTAAGGCCAAGAAGGCCAGAACACAGTATGACTACAGGGGAGTGCGTTCGGACGTATCGCTGGTGCCACCGATTCGGCAGACCGCTTCCATCTTCAAGCAGCCGGTGACCGTGTACAAGACTCAGGAGAGCAAGGTGAAGACAGATCTGAAGCACGGCACTCAGGAGAAGCCCAAGCAGCTGTTTTGGGAGAAGAGACTTGAGGGCTTAACGGCATGTGACTCATTTGGGGTTCTTGCGACGACGACTCTGCCGAAGAACATCAAACCACTGGGTCCATTCATGAGTGATTCTACAACCATCCAGTCCCTCGCCACCGCTCTTCATGTCTCCTCACAACCTATTACAGGTCAAACGGGATCGAGATCGGCGATCCAGCAGAACCCGGGAGTGTTCCTGAACCCCGAGCAGCCCCTTATCGCCGGCGTGAGCGTGGGCGACGACGACGTGCGTCGGCAGGAGGAGCGTGTTCGTCGAGCGCGCGCGCGTCTGCACGCCGCTCTCGCCGCCGCATAG
- Protein Sequence
- MNISVEKKRNECAALGKGWTREEVLRKTGLSAGKLDVYYYSPTGKKFRSKPELVRYLGDSLDLSCFDFQQGQINTMLLRKAKKARTQYDYRGVRSDVSLVPPIRQTASIFKQPVTVYKTQESKVKTDLKHGTQEKPKQLFWEKRLEGLTACDSFGVLATTTLPKNIKPLGPFMSDSTTIQSLATALHVSSQPITGQTGSRSAIQQNPGVFLNPEQPLIAGVSVGDDDVRRQEERVRRARARLHAALAAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155316;
- 90% Identity
- -
- 80% Identity
- -