Nsal004897.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000029.1:1905573-1908539[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 8.4e-06 0.00081 20.6 1.6 1 23 168 190 168 190 0.98 2 16 5.4e-07 5.3e-05 24.3 3.5 1 23 195 217 195 217 0.98 3 16 2.7e-05 0.0027 18.9 4.3 1 23 223 245 223 245 0.97 4 16 3.9e-05 0.0038 18.5 0.9 1 21 251 271 251 272 0.95 5 16 1e-06 9.9e-05 23.4 0.2 1 23 279 301 279 301 0.97 6 16 0.00021 0.02 16.2 0.1 1 23 444 466 444 466 0.98 7 16 0.00018 0.017 16.4 6.0 2 23 473 494 472 494 0.92 8 16 1.6e-06 0.00016 22.8 1.5 1 23 500 522 500 522 0.98 9 16 2.7e-05 0.0026 19.0 1.2 1 23 528 551 528 551 0.96 10 16 0.0026 0.26 12.7 0.9 1 23 563 585 563 585 0.98 11 16 1.1e-05 0.001 20.2 5.0 1 23 591 613 591 613 0.97 12 16 2.1e-06 0.00021 22.4 0.5 1 23 620 642 620 642 0.96 13 16 2.7e-06 0.00027 22.1 1.2 1 23 648 670 648 670 0.98 14 16 4e-07 3.9e-05 24.7 0.9 3 23 678 698 676 698 0.96 15 16 2e-05 0.0019 19.4 0.1 1 23 704 726 704 726 0.99 16 16 0.038 3.7 9.0 0.5 1 23 731 754 731 754 0.96
Sequence Information
- Coding Sequence
- ATGAATCATTTAGAATATGATTTCAATCGCATGTGTCGTGCTTGTAAGTGTGAATCGTCCGAATTGTGTTCAGTGTTTGAAAGAAACGAAGCAACAGGGCGGAATGCCCGACTTGACGAGATGCTAATGGCGTGCGCCTCTGTTCAGatAAATTCGGAAGATGGTCTGCCAGGATTTATTTGCCATAAGTGTGTCAAATTGCTGAGTCTTGCATAcgaatttaaacaaatttgcgAAACAACTGACTCGAGTCTTCGCGATTATTTAAAAGCGAAAGGAATCAAACAAGAGAACTCACTTCTAAATCAAAACAATGACCAAGAGTTGCACAGTCAATTATTGGATTTCAACGCGATGTACAACGAAATACAGCAAAAAGTCACGGATGCTGTTGGCGTCAAAGTCGATCCCGATTTTACAACCGCCGTAGTCAATTGCGAAGTTGCTCAACTAAAAAGCAACCGCGATTTCATAGAAATTATCGATAACGATAAAGTGATCTTCACTTGTAATACATGTAACAAGGTATTTTATACCTTGGATGGCTTACGCAGTCATAAACGAATTCATACGGGTGAAATGTTCAAAtgtaatatatgcaataaaGAATATACGAGATCGAATCATTTGCAACGCCACATGGCGTCGCATGGTCGCCGAAAAGTACACATTTGcaaaatttgcaataaaacactaaCGAGATTAGAACATCTAAAACGACATTTGATTACTCATATGAAAAACAAACCGTATCAATGCGAAATGTGCAAACGCGGATTTAATCGCTCCGAGCATTTAATTAACCATGTAAAACGATGCAAAGGTGATAAAATATACGCCTGTGAAGTTTGTAACAAAGGCTTCACTCGTACTGATAGCTTAGAAGTACACATGCGACTTCACGACAACAAAGCGCCAGTGCTTCCAACAATTGAAACTCTGGATAAAATCCACGAACACTATATCGAAGTCGATAATTACTCTGGTAAATCCGAATCGGAGCATTCGGATGCTGATAACTTTTCGGATCATGACGACGGCGCCGATGAGAATCAAGATTGTTTCGAGCCGCAAGTGGACATCTTAGAAAATACCGATGATGTGAAGATCGAACGTAAATATGAAGCTGATGAAACATTCTTAGCGGCGCTTGCTGAGAAAAGCGACATCGAAAATTACGAAGATATCGAAAGCGATAGTGCGCATTCAGAATATCTACCAAATCGGGTGAAACCGAAAGGACGTAAACGTGGACGACCGCGAAAACATAAAGTAAGAGAACGTAAACTGCGGACGGTCAAAGAAGAAAAATATGATGAACCTGGTGAGTTTCCATGTCTTATCTGCAATAAAGTTCTTTCAACCGCGGTTGGGTTAGAAATTCACACACGTAAACACAGCGGTTTAAAGCTGCATAGTTGTATAGTTTGTCAAAAAAAGTTCACCCGCTCAAATCATTTGAAACGCCATATGATTACTCACTCCGAACACAAACCTTATACTTGTAATATCTGCCCGAAAGCTTTCTCGCGACGAGATCATATGGCCCAGCATTTGAAGCTTCACATTGCGTCAAAAGAATTCGAATGCGAAATTTGCAAGCGACCATTTACTCGGATAGAACACCTAGTGAAGCATCAAGCTTCGAAACACAATATTGGGCAAAAGATTATGaatgaaaagaaatataaatgttcGGTGTGTTTGAAAGGATTCACCACGGAAAAGTACAGAGATGTTCACATGCGTGGCCATTCCGGCGACAAGAAGTTCAATTGTAAGACTTGCgagaaaacatttatttcgaaatcaCACCTCACCGAACACATGAAGTTCCACAATGAACATTCTAAGAAGTTCTTGTGCTCCGAATGTGGACAAAGATTCATCAGGAATGACTACCTAGTTATTCACATGCGACGGCATCGTGGCGAGAAACCattcaaatgtaaatattgCGGCAAAGGTTTCCCTCGGACAACAGATCTTACAGTTCACGAGCGTTATCACACCGGcgaaaaaacacatttatgcACCATATGCGGTAGAGGTTTTGGaagagCATATAATTTAACAGTACATATGCGTACTCACACCGGGGAAAAACCGTATCAATGTACCTATTGCGATGCTGCGTTTGCGCAAGGCAATGATTTAAAAGCGCATGTGCGACGCCATACAGGCGAACGCTTCCAATGTGAAATTTGCACCGAAAGCTTTCTCATGGGATATTTGCTCACCCAACATAAGAGAAGTGTTCATGGCTTACAGGTGGTATCAAATATAAGAAGATTGCAACCATTTCCGCCTTCACAACCGCCCCCACAAATACCACCGCAACATTTGCAGCTTCCAGTACACATTTTACCACCACTAGTTATACCATCTCAAATACAAACTGTACTATCTCCGAATTCAATGCCCCCGccgcagcaacaacaacaaccatcAATGGTTGACTAA
- Protein Sequence
- MNHLEYDFNRMCRACKCESSELCSVFERNEATGRNARLDEMLMACASVQINSEDGLPGFICHKCVKLLSLAYEFKQICETTDSSLRDYLKAKGIKQENSLLNQNNDQELHSQLLDFNAMYNEIQQKVTDAVGVKVDPDFTTAVVNCEVAQLKSNRDFIEIIDNDKVIFTCNTCNKVFYTLDGLRSHKRIHTGEMFKCNICNKEYTRSNHLQRHMASHGRRKVHICKICNKTLTRLEHLKRHLITHMKNKPYQCEMCKRGFNRSEHLINHVKRCKGDKIYACEVCNKGFTRTDSLEVHMRLHDNKAPVLPTIETLDKIHEHYIEVDNYSGKSESEHSDADNFSDHDDGADENQDCFEPQVDILENTDDVKIERKYEADETFLAALAEKSDIENYEDIESDSAHSEYLPNRVKPKGRKRGRPRKHKVRERKLRTVKEEKYDEPGEFPCLICNKVLSTAVGLEIHTRKHSGLKLHSCIVCQKKFTRSNHLKRHMITHSEHKPYTCNICPKAFSRRDHMAQHLKLHIASKEFECEICKRPFTRIEHLVKHQASKHNIGQKIMNEKKYKCSVCLKGFTTEKYRDVHMRGHSGDKKFNCKTCEKTFISKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCEICTESFLMGYLLTQHKRSVHGLQVVSNIRRLQPFPPSQPPPQIPPQHLQLPVHILPPLVIPSQIQTVLSPNSMPPPQQQQQPSMVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039447; iTF_01040292;
- 90% Identity
- iTF_01039447; iTF_01040292; iTF_00873224;
- 80% Identity
- -