Ning008712.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- -
- Assembly
- GCA_018344505.1
- Location
- JADQWA010001392.1:32322-34798[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.4e-06 0.00035 20.8 1.6 1 23 168 190 168 190 0.98 2 14 2.8e-07 2.3e-05 24.6 3.5 1 23 195 217 195 217 0.98 3 14 1.4e-05 0.0012 19.2 4.3 1 23 223 245 223 245 0.97 4 14 2e-05 0.0017 18.7 0.9 1 21 251 271 251 272 0.95 5 14 5.3e-07 4.3e-05 23.7 0.2 1 23 279 301 279 301 0.97 6 14 0.00019 0.016 15.7 0.1 1 23 447 469 447 469 0.98 7 14 2.2e-06 0.00017 21.8 7.4 1 23 475 497 475 497 0.97 8 14 8.3e-07 6.8e-05 23.1 1.5 1 23 503 525 503 525 0.98 9 14 6.7e-06 0.00054 20.3 0.4 1 23 531 554 531 554 0.96 10 14 0.0032 0.26 11.8 0.5 1 23 566 588 566 588 0.98 11 14 5.6e-06 0.00046 20.5 5.0 1 23 594 616 594 616 0.97 12 14 1.1e-06 9e-05 22.7 0.5 1 23 623 645 623 645 0.96 13 14 1.4e-06 0.00012 22.4 1.2 1 23 651 673 651 673 0.98 14 14 1.3 1e+02 3.6 0.2 3 10 681 688 679 690 0.84
Sequence Information
- Coding Sequence
- ATGAATCATTTAGAATATGATTTCAATCGTATATGTCGTGCTTGTAAGTGTGAATCGTCAGATTTGTGTTCAGTGTTTGAAAGAAACGAAGCAACAGGGCGGAATGCCCGACTTGACGAGATGCTAATGGCGTGCGCCTCTGTTCAGATAAATTCGGAAGATGGCCTGCCAGGATATATTTGTCACAAGTGTGTCAAATTATTGAGTCTTGCATACGAATTTAAACAAATTTGCGAAACAACTGACTCGAGTCTTCGAGATTATTTAAAGGCGAAAGGAATTAAACAAGAGAACACGCTTGTAAATCAAAACAATGATCAAGAGTTGCACAGTCAATTATTGGATTTCAACGCGATGTACAACGAAATACAACAAAAAGTTACGGAAGCTGTTGGCGTCAAAGTGGATCCCGACTTTACAACCGCCGTAGTCGACTGCGAGGTAGCCCAAATAAAAAGTAATCGCGATTACATTGAAATTATCGATAACGACAAAGTCATCTTTACCTGTAATACGTGCAACAAAGTATTTTATACCTTAGATGGTTTGCGAAGTCATAAACGAATTCACACTGGAGAAATGTTCAAATGTAATATTTGCAATAAAGAGTACACAAGATCTAATCATTTACAACGCCACATGGCGTCGCACGGTCGCCGAAAAGTGCACATTTGCAAAATATGCAATAAAACACTAACGAGGCTAGAACATTTAAAGCGGCATTTAATTACGCACATGAAAAACAAACCGTATCAATGCGAAATGTGTAAACGTGGATTTAATCGCTCAGAACATTTAATTAACCACGTAAAACGATGCAAAGGTGACAAAATATACGCCTGTGAAGTATGTAACAAAGGGTTCACTCGCACCGACAGCTTAGAAGTACACATGCGGCTGCACGACAACAAAGCGCCAGTGCTTCCAACAATTGAAACCCTGGACAAAATCCACGAACACTATATCGAAGTGGACAACTATTCCGGAAAATCCGAATCTGAACACTCGGATGCTGATAACTTTTCGGACCATGACGATGGAGCAGACGACAATCAAGATTGTTTCGAGCCTCAAGTGGACATCTTAGAAAATGCCGACGAGGTGAAAATAGAACGTAAATATGAAACTGATGAAACTTTCTTAGCAGCGCTTGCAGAGAAAAGCGATATCGAAAATTACGAAGATATCGATAGCGATAGCGCGCATTCGGAGTATCTACCAAATCGGGTGAAACCGAAAGGACGAAAACGCGGACGACCGCGAAAACATAAAATAAAAACCGGCAGAGAACGTAAACTAAGAGCGGTCAAAGAAGAAAAATATGATGAACCTGGTGAGTTTCCATGTCTTATCTGCAATAAAGTCCTGTCTACCGCGATTGGGTTAGAAATTCACACACGTAAACACAGCGGGTTAAAGCTACATAGTTGTAAAGTTTGTCAGAAAAAGTTCACCCGCTCAAATCATTTGAAACGCCATATGATAACTCATTCCGAACACAAACCTTATACTTGTAATATCTGCCCGAAAGCTTTCTCGCGACGAGATCATATGGCCCAGCATTTGAAGCTTCATATAGCGTCAAAAGAATTCGAATGCGAAATTTGTAAACGACCATTTACACGGATAGAGAACCTAGTGAAGCATCAAGCTTCGAAACACAATATTGGACAAAAGATTATGAATGAAAAGAAATATAAATGTGCGGTGTGTTTGAAAGGATTCACCACGGAAAAGTACAGAGATGTCCATATGCGTGGCCATTCAGGCGACAAGAAGTTCAATTGTAAAACTTGCGAGAAAACATTTATTTCGAAATCACATCTGACGGAACATATGAAGTTCCACAATGAACACTCGAAGAAGTTCTTGTGCTCCGAATGCGGACAAAGATTCATCAGGAATGACTATTTAGTTATTCATATGAGGCGACACCGTGGCGAAAAACCGTTCAAATGCAAATATTGCGGCAAAGGTTTTCCTCGGACTACAGATCTTACAGTTCATGAACGTTATCATACTGGCGAAAAAACGCATTTATGCACCATATGTGGTAGAGGTTTTGGAAGGTGA
- Protein Sequence
- MNHLEYDFNRICRACKCESSDLCSVFERNEATGRNARLDEMLMACASVQINSEDGLPGYICHKCVKLLSLAYEFKQICETTDSSLRDYLKAKGIKQENTLVNQNNDQELHSQLLDFNAMYNEIQQKVTEAVGVKVDPDFTTAVVDCEVAQIKSNRDYIEIIDNDKVIFTCNTCNKVFYTLDGLRSHKRIHTGEMFKCNICNKEYTRSNHLQRHMASHGRRKVHICKICNKTLTRLEHLKRHLITHMKNKPYQCEMCKRGFNRSEHLINHVKRCKGDKIYACEVCNKGFTRTDSLEVHMRLHDNKAPVLPTIETLDKIHEHYIEVDNYSGKSESEHSDADNFSDHDDGADDNQDCFEPQVDILENADEVKIERKYETDETFLAALAEKSDIENYEDIDSDSAHSEYLPNRVKPKGRKRGRPRKHKIKTGRERKLRAVKEEKYDEPGEFPCLICNKVLSTAIGLEIHTRKHSGLKLHSCKVCQKKFTRSNHLKRHMITHSEHKPYTCNICPKAFSRRDHMAQHLKLHIASKEFECEICKRPFTRIENLVKHQASKHNIGQKIMNEKKYKCAVCLKGFTTEKYRDVHMRGHSGDKKFNCKTCEKTFISKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041084;
- 90% Identity
- iTF_01041084;
- 80% Identity
- -